Browse Element(s) Details


OsAffx.29397.1.S1_at

Description tigr:9636.m02807
TID=OsAffx.29397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2837011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28328Os.45977.1.S1_at5/118+17153454..17155960retrotransposon protein, putative, unclassified
LOC_Os08g28340OsAffx.10637.2.S1_at1/118+17159672..17160742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_x_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_x_at3/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_at2/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.5211.1.S1_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.17546.2.S1_x_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28360OsAffx.29396.3.S1_at11/118+17171692..17173987hypothetical protein
LOC_Os08g28370OsAffx.29397.1.S1_at11/118+17175393..17176177hypothetical protein
LOC_Os08g28370OsAffx.20020.1.S1_x_at1/118+17175393..17176177hypothetical protein
LOC_Os08g28380OsAffx.17208.1.S1_at7/118+17179139..17179948expressed protein
LOC_Os08g28390NANA8+17181056..17182773retrotransposon protein, putative, unclassified
LOC_Os08g28400OsAffx.29398.1.S1_at11/118+17187749..17190395expressed protein
LOC_Os08g28400Os.25556.1.S1_x_at7/118+17187749..17190395expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29397.1.S1_at--242--3791Chr08:17175513..17175537 (25 bp)
CTCGGTCTTCATGGCGACGAAGTGC
LOC_Os08g28370
OsAffx.29397.1.S1_at--637--9631Chr08:17175521..17175545 (25 bp)
TCATGGCGACGAAGTGCTTCCCGGG
LOC_Os08g28370
OsAffx.29397.1.S1_at--476--611Chr08:17176002..17176026 (25 bp)
ATGCGCACGGCGGACAGTCGGCTCT
LOC_Os08g28370
OsAffx.29397.1.S1_at--801--2131Chr08:17176015..17176039 (25 bp)
ACAGTCGGCTCTTCCTGAGCTGGAA
LOC_Os08g28370
OsAffx.29397.1.S1_at--604--8391Chr08:17176050..17176074 (25 bp)
GGCGCAGGAAGGCAAACCAGACTTT
LOC_Os08g28370
OsAffx.29397.1.S1_at--336--2654Chr11:18342233..18342253 (21 bp)
AACCAGACTTTTGGCTGGGCTTCTA
NONE
OsAffx.29397.1.S1_at--1140--10394Chr12:8231562..8231773 (25 bp)
TTTTGGCTGGGCTTCTATTGCACAG
NONE
OsAffx.29397.1.S1_at--339--8294Chr12:8231758..8231782 (25 bp)
GGCTTCTATTGCACAGCCCGATAGA
NONE
OsAffx.29397.1.S1_at--431--9013Chr08:17176090..17176114 (25 bp)
TGCACAGCCCGATAGAAGGAGGAAT
LOC_Os08g28370
OsAffx.29397.1.S1_at--867--5291Chr08:17176104..17176128 (25 bp)
GAAGGAGGAATGCAAACCAGACTTT
LOC_Os08g28370
OsAffx.29397.1.S1_at--873--8951Chr08:17176114..17176138 (25 bp)
TGCAAACCAGACTTTGGGAAGGGAT
LOC_Os08g28370
Target Sequence 
CTCGGTCTTCATGGCGACGAAGTGCTTCCCGGGGTCTTCGGCTTTGGGGAGATGGCTGCTGAGCTTGCTATTGACCTTGC
GGAGCCGAGAGAGGTGGCGGCGCTGACTGGCGACGGCCGAAGCGACGGCGCACGGCGGCTGGAGCGGCGGCCGAAGGAGC
AACGGGGAGGTCGGATTTGGAAGGAGGAGGCGGCGGCAGTGCATGCGCACGGCGGACAGTCGGCTCTTCCTGAGCTGGAA
GATGAACAGTGGCGCAGGAAGGCAAACCAGACTTTTGGCTGGGCTTCTATTGCACAGCCCGATAGAAGGAGGAATGCAAA
CCAGACTTTGGGAAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis