Browse Element(s) Details


Os.25556.1.S1_at

Description gb:AK120474.1
DB_XREF= gi:37990097
TID=Os.25556.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110P15, full insert sequence.
FL= gb:AK120474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2835011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28300NANA8+17139367..17139708hypothetical protein
LOC_Os08g28310OsAffx.10637.3.S1_s_at10/118+17141376..17144946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28310OsAffx.10637.4.S1_s_at8/118+17141376..17144946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28310OsAffx.10637.1.S1_s_at8/118+17141376..17144946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28319Os.45977.1.S1_at5/118+17147177..17149683retrotransposon protein, putative, unclassified
LOC_Os08g28328Os.45977.1.S1_at5/118+17153454..17155960retrotransposon protein, putative, unclassified
LOC_Os08g28340OsAffx.10637.2.S1_at1/118+17159672..17160742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_x_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_x_at3/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_at2/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.5211.1.S1_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.17546.2.S1_x_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28360OsAffx.29396.3.S1_at11/118+17171692..17173987hypothetical protein
LOC_Os08g28370OsAffx.29397.1.S1_at11/118+17175393..17176177hypothetical protein
LOC_Os08g28370OsAffx.20020.1.S1_x_at1/118+17175393..17176177hypothetical protein
LOC_Os08g28380OsAffx.17208.1.S1_at7/118+17179139..17179948expressed protein
LOC_Os08g28390NANA8+17181056..17182773retrotransposon protein, putative, unclassified
LOC_Os08g28400OsAffx.29398.1.S1_at11/118+17187749..17190395expressed protein
LOC_Os08g28400Os.25556.1.S1_x_at7/118+17187749..17190395expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25556.1.S1_at--646--6954Chr11:19261431..19261454 (24 bp)
GTAGACTTCAATAACGTGTTCTCCT
NONE
Os.25556.1.S1_at--203--5695Chr12:12188543..12188564 (22 bp)
GACTTCAATAACGTGTTCTCCTTAT
NONE
Os.25556.1.S1_at--229--10515Chr12:12188543..12188567 (25 bp)
TTCAATAACGTGTTCTCCTTATCTT
NONE
Os.25556.1.S1_at--553--3097Chr12:12188546..12188570 (25 bp)
AATAACGTGTTCTCCTTATCTTAGA
NONE
Os.25556.1.S1_at--251--9817Chr12:12188548..12188572 (25 bp)
TAACGTGTTCTCCTTATCTTAGATG
NONE
Os.25556.1.S1_at--331--1917Chr11:19261443..19261467 (25 bp)
ACGTGTTCTCCTTATCTTAGATGGG
NONE
Os.25556.1.S1_at--670--3998Chr11:19261444..19261468 (25 bp)
CGTGTTCTCCTTATCTTAGATGGGT
NONE
Os.25556.1.S1_at--157--6738Chr11:19261447..19261471 (25 bp)
GTTCTCCTTATCTTAGATGGGTTAT
NONE
Os.25556.1.S1_at--131--10138Chr11:19261455..19261479 (25 bp)
TATCTTAGATGGGTTATTTTTTATT
NONE
Os.25556.1.S1_at--202--10378Chr11:19261472..19261496 (25 bp)
TTTTTATTTTAAGTGCGTGTTCTCA
NONE
Os.25556.1.S1_at--652--10359Chr11:19261474..19261498 (25 bp)
TTTATTTTAAGTGCGTGTTCTCAAT
NONE
Target Sequence 
GTAGACTTCAATAACGTGTTCTCCTTATCTTAGATGGGTTATTTTTTATTTTAAGTGCGTGTTCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis