Browse Element(s) Details


OsAffx.29396.3.S1_at

Description tigr:9636.m02806
TID=OsAffx.29396.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2836011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28319Os.45977.1.S1_at5/118+17147177..17149683retrotransposon protein, putative, unclassified
LOC_Os08g28328Os.45977.1.S1_at5/118+17153454..17155960retrotransposon protein, putative, unclassified
LOC_Os08g28340OsAffx.10637.2.S1_at1/118+17159672..17160742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_x_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_x_at3/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_at2/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.5211.1.S1_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.17546.2.S1_x_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28360OsAffx.29396.3.S1_at11/118+17171692..17173987hypothetical protein
LOC_Os08g28370OsAffx.29397.1.S1_at11/118+17175393..17176177hypothetical protein
LOC_Os08g28370OsAffx.20020.1.S1_x_at1/118+17175393..17176177hypothetical protein
LOC_Os08g28380OsAffx.17208.1.S1_at7/118+17179139..17179948expressed protein
LOC_Os08g28390NANA8+17181056..17182773retrotransposon protein, putative, unclassified
LOC_Os08g28400OsAffx.29398.1.S1_at11/118+17187749..17190395expressed protein
LOC_Os08g28400Os.25556.1.S1_x_at7/118+17187749..17190395expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29396.3.S1_at--94--3511Chr08:17173250..17173332 (25 bp)
CATGGTTGATGCAGGGTCGTTGCTA
LOC_Os08g28360
OsAffx.29396.3.S1_at--761--6651Chr08:17173326..17173350 (25 bp)
GTTGCTAGGGTCTTTGGCAGTCCTG
LOC_Os08g28360
OsAffx.29396.3.S1_at--824--9271Chr08:17173346..17173370 (25 bp)
TCCTGTGCGGAGGACTGTGGTTTTC
LOC_Os08g28360
OsAffx.29396.3.S1_at--291--6811Chr08:17173365..17173389 (25 bp)
GTTTTCGCCGCTTGTCATTGAGAAG
LOC_Os08g28360
OsAffx.29396.3.S1_at--605--2751Chr08:17173396..17173420 (25 bp)
AAGACGGTCGTCGAGACGTCTGCTT
LOC_Os08g28360
OsAffx.29396.3.S1_at--60--3651Chr08:17173418..17173442 (25 bp)
CTTCAGAGTATTCTTTGGTGGCCCC
LOC_Os08g28360
OsAffx.29396.3.S1_at--885--3831Chr08:17173454..17173478 (25 bp)
CTGCTGACTTCGAGACTGGCGCGGA
LOC_Os08g28360
OsAffx.29396.3.S1_at--985--10591Chr08:17173572..17173596 (25 bp)
TTCTGCCATCAAGCGTTTGGCGGTT
LOC_Os08g28360
OsAffx.29396.3.S1_at--298--4711Chr08:17173703..17173727 (25 bp)
GCGGCCCATTGTTCAACCGAACGGA
LOC_Os08g28360
OsAffx.29396.3.S1_at--548--4111Chr08:17173720..17173744 (25 bp)
CGAACGGACTATGCGGGCTTGCCTT
LOC_Os08g28360
OsAffx.29396.3.S1_at--841--5951Chr08:17173928..17173952 (25 bp)
GAGCAAGCACATTCTACCGCTCTAA
LOC_Os08g28360
Target Sequence 
CATGGTTGATGCAGGGTCGTTGCTAGGGTCTTTGGCAGTCCTGTGCGGAGGACTGTGGTTTTCGCCGCTTGTCATTGAGA
AGGGGAAGAAGACGGTCGTCGAGACGTCTGCTTCAGAGTATTCTTTGGTGGCCCCCCACTGCGCCCCTGCTGACTTCGAG
ACTGGCGCGGACCTTATCCCCTTCGTCGAGGGGGTAAGTAATCTCGTGTCTCTGGCTGGCAGCCCGAGCCTATTCACCGA
GCTGAACGAGTTCGACGAAGGCTATTCTGCCATCAAGCGTTTGGCGGTTCGGATTCTCGCGGCCCATTGTTCAACCGAAC
GGACTATGCGGGCTTGCCTTGACGGGTTCAAGAACCGTCTTCGAGCCAAGGACGACGAACTGGGCCGCAAGAGCTTGGAG
ATGGAGGGCCTCGCCAATACCCTCAAGGAGGCGAAGGCTGAGAATAAGCGGCTCCAAGCTGAATTGGAGAAGGGGAGCGA
GGCGAAGGCTGAGATAGAGCGCCTCAAGGCTGAGCTCAAAAAGGAGCAAGCACATTCTACCGCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29396.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis