Browse Element(s) Details


OsAffx.29404.1.S1_at

Description tigr:9636.m02836
TID=OsAffx.29404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g286509/11hypothetical protein
LOC_Os04g195401/11retrotransposon protein, putative, unclassified
LOC_Os11g359201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28600OsAffx.29403.1.S1_at11/118+17337465..17346049NB-ARC domain containing protein
LOC_Os08g28610NANA8+17346571..17349647hypothetical protein
LOC_Os08g28620NANA8+17354449..17354676retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29404.1.S1_at--137--3951Chr08:17367664..17367688 (25 bp)
CGGAAGTCGATATCGCCGCGGGCAA
LOC_Os08g28650
OsAffx.29404.1.S1_at--858--4471Chr08:17367696..17367720 (25 bp)
GCCGGAGGAAGAGTCGCCATGAAAT
LOC_Os08g28650
OsAffx.29404.1.S1_at--29--2791Chr08:17367704..17367728 (25 bp)
AAGAGTCGCCATGAAATCGCCTTGC
LOC_Os08g28650
OsAffx.29404.1.S1_at--613--679Chr12:6031917..6031938 (22 bp)
ATGAAATCGCCTTGCGCACCGAGGG
NONE
OsAffx.29404.1.S1_at--378--5798Chr08:17367758..17367782 (25 bp)
GACGAAGTTGGCTTAAGCGGTGAAA
LOC_Os08g28650
OsAffx.29404.1.S1_at--45--2871Chr08:17367787..17367811 (25 bp)
AAGTGACGGTGTGAAATCTCTCGGG
LOC_Os08g28650
OsAffx.29404.1.S1_at--312--10611Chr06:15245124..15245151 (23 bp)
TTCGAGTCGGACAAGCCGATCGAAT
NONE
OsAffx.29404.1.S1_at--1047--3931Chr08:14124959..14124978 (20 bp)
CGGACAAGCCGATCGAATAGATTTA
NONE
OsAffx.29404.1.S1_at--1068--6534Chr08:17369193..17369217 (25 bp)
GATTTAGTTCTTTCTTGTTTACTTG
LOC_Os08g28650
OsAffx.29404.1.S1_at--752--3611Chr08:17369206..17369230 (25 bp)
CTTGTTTACTTGTGACTGTCGATCG
LOC_Os08g28650
OsAffx.29404.1.S1_at--955--8674Chr12:11825464..11825486 (23 bp)
TGTGACTGTCGATCGATGCAAAGAT
NONE
Target Sequence 
CGGAAGTCGATATCGCCGCGGGCAAAAGCTTGGCCGGAGGAAGAGTCGCCATGAAATCGCCTTGCGCACCGAGGGGATCG
CCGGGGAGAGAGAGGACGAAGTTGGCTTAAGCGGTGAAAACAGAAGTGACGGTGTGAAATCTCTCGGGGGTGACGGTATC
GGAGATGAAGATAAAACCGAAGTGGAATCCAAGATAGAAATCATTCCGGAAACAGAGCAAGAATCGGCTGAAGTCCGAAT
CGGCTGCAACCAGATCGACAGAGTTCGAGTCGGACAAGCCGATCGAATAGATTTAGTTCTTTCTTGTTTACTTGTGACTG
TCGATCGATGCAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis