Browse Element(s) Details


OsAffx.29424.1.S1_at

Description tigr:9636.m02957
TID=OsAffx.29424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2975010/11hypothetical protein
LOC_Os08g085927/11expressed protein
LOC_Os12g203904/11expressed protein
LOC_Os05g070902/11Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29730Os.8737.1.S1_at11/118+18132809..18136710expressed protein
LOC_Os08g29740OsAffx.5980.1.S1_at9/118+18138427..18140983hypothetical protein
LOC_Os08g29750OsAffx.29424.1.S1_at10/118+18150187..18151176hypothetical protein
LOC_Os08g29750Os.27362.1.S1_at1/118+18150187..18151176hypothetical protein
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein
LOC_Os08g29770Os.53285.1.S1_x_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29770OsAffx.17231.1.S1_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29424.1.S1_at--989--7951NONE
GGATCGGGAGTAATCTTGTTGCTTA
NONE
OsAffx.29424.1.S1_at--599--6092Chr08:18150738..18150762 (25 bp)
GAGTAATCTTGTTGCTTACTGGCAG
LOC_Os08g29750
OsAffx.29424.1.S1_at--1010--6792Chr08:18151012..18151036 (25 bp)
GTTTCTGACCTAGGTGTAAACTTAT
LOC_Os08g29750
OsAffx.29424.1.S1_at--229--8932Chr08:18151017..18151041 (25 bp)
TGACCTAGGTGTAAACTTATTAGTT
LOC_Os08g29750
OsAffx.29424.1.S1_at--405--10051Chr08:18151037..18151061 (25 bp)
TAGTTAATCACTACGACGATCTTGG
LOC_Os08g29750
OsAffx.29424.1.S1_at--844--6751Chr08:18151039..18151063 (25 bp)
GTTAATCACTACGACGATCTTGGTC
LOC_Os08g29750
OsAffx.29424.1.S1_at--48--1893Chr08:18151052..18151076 (25 bp)
ACGATCTTGGTCGAGTGGCTGACTC
LOC_Os08g29750
OsAffx.29424.1.S1_at--531--433Chr08:18151055..18151079 (25 bp)
ATCTTGGTCGAGTGGCTGACTCATC
LOC_Os08g29750
OsAffx.29424.1.S1_at--908--7212Chr08:18151061..18151085 (25 bp)
GTCGAGTGGCTGACTCATCGCTGGA
LOC_Os08g29750
OsAffx.29424.1.S1_at--1063--4714Chr08:18151080..18151104 (25 bp)
GCTGGATGATGGTTTTCTTGCAGGC
LOC_Os08g29750
OsAffx.29424.1.S1_at--94--6253Chr08:18151087..18151111 (25 bp)
GATGGTTTTCTTGCAGGCGGAGGCG
LOC_Os08g29750
Target Sequence 
GGATCGGGAGTAATCTTGTTGCTTACTGGCAGGGGCCCGGGAATATGGATGTGTGTTCTTTGCTTGTTGGGGTTTCTGAC
CTAGGTGTAAACTTATTAGTTAATCACTACGACGATCTTGGTCGAGTGGCTGACTCATCGCTGGATGATGGTTTTCTTGC
AGGCGGAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis