Browse Element(s) Details


OsAffx.29441.1.S1_at

Description tigr:9636.m03073
TID=OsAffx.29441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ABC transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3078010/11ABC transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30750Os.14491.2.S1_x_at5/118+18836176..18843812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30750Os.47463.1.S1_x_at4/118+18836176..18843812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30760OsAffx.21465.1.S1_x_at1/118+18845099..18848413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30770Os.18695.1.S1_at11/118+18860450..18866114ABC transporter family protein, putative, expressed
LOC_Os08g30780OsAffx.29441.1.S1_at10/118+18868215..18874765ABC transporter family protein
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29441.1.S1_at--1063--2252Chr08:18873790..18873814 (25 bp)
AAATCTGTTCCACAGCGGTTTCGGC
LOC_Os08g30780
OsAffx.29441.1.S1_at--457--8391Chr08:18873812..18873836 (25 bp)
GGCGACAAATCGGTGAACAAGTACA
LOC_Os08g30780
OsAffx.29441.1.S1_at--991--2931Chr08:18873853..18873877 (25 bp)
AAGGCTTAGTGTCGCCATCGCACTG
LOC_Os08g30780
OsAffx.29441.1.S1_at--218--531Chr08:18873869..18873893 (25 bp)
ATCGCACTGATTGGCAACCCAAAGG
LOC_Os08g30780
OsAffx.29441.1.S1_at--198--6831Chr08:18873998..18874022 (25 bp)
GTTTACATGGACGAACCGAGCACCG
LOC_Os08g30780
OsAffx.29441.1.S1_at--656--4231Chr08:18874013..18874037 (25 bp)
CCGAGCACCGGATTGGACACGACAT
LOC_Os08g30780
OsAffx.29441.1.S1_at--9--4111Chr08:18874032..18874056 (25 bp)
CGACATCGAGGAGCAATCTCTGGAA
LOC_Os08g30780
OsAffx.29441.1.S1_at--709--971Chr08:18874040..18874064 (25 bp)
AGGAGCAATCTCTGGAATGTCATTA
LOC_Os08g30780
OsAffx.29441.1.S1_at--528--2751Chr08:18874076..18874100 (25 bp)
AAGAACTGCACCATCATTCTCACCA
LOC_Os08g30780
OsAffx.29441.1.S1_at--454--5731Chr08:18874277..18874301 (25 bp)
GACGGCAATTTCCAGTGCCTCGGAA
LOC_Os08g30780
OsAffx.29441.1.S1_at--81--1131NONE
AGTGCCTCGGAACTCCAAAGGAGCT
NONE
Target Sequence 
AAATCTGTTCCACAGCGGTTTCGGCGACAAATCGGTGAACAAGTACAGTGGTGGCATGAAAAGAAGGCTTAGTGTCGCCA
TCGCACTGATTGGCAACCCAAAGGTTGTTTACATGGACGAACCGAGCACCGGATTGGACACGACATCGAGGAGCAATCTC
TGGAATGTCATTAAGAGAGCAAAGAAGAACTGCACCATCATTCTCACCACACATTCCATGGAGGAGGCTGAGGAGCTCTG
CGACCGCGTCGGCATCTTCGTCGACGGCAATTTCCAGTGCCTCGGAACTCCAAAGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis