Browse Element(s) Details


OsAffx.29453.1.S1_at

Description tigr:9636.m03145
TID=OsAffx.29453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3148011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein
LOC_Os08g31510Os.53773.1.S1_s_at11/118+19357249..19358796expressed protein
LOC_Os08g31520OsAffx.17271.1.S1_at11/118+19359315..19360250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29453.1.S1_at--533--8051Chr08:19341170..19341194 (25 bp)
GGAGACCTCGACGATGGCCATCCGT
LOC_Os08g31480
OsAffx.29453.1.S1_at--432--6231Chr08:19341158..19341182 (25 bp)
GATGGCCATCCGTCTCTCTTTCTCT
LOC_Os08g31480
OsAffx.29453.1.S1_at--855--8231Chr08:19339394..19339413 (20 bp)
GGCACCAGAACATGGGCGGACCCAG
LOC_Os08g31480
OsAffx.29453.1.S1_at--419--8531Chr08:19339365..19339389 (25 bp)
TGGACACCCTAAACCATGGCCCGGA
LOC_Os08g31480
OsAffx.29453.1.S1_at--326--3491Chr08:19339351..19339375 (25 bp)
CATGGCCCGGAGCTTATGGTTGAAA
LOC_Os08g31480
OsAffx.29453.1.S1_at--1001--10412Chr04:13410151..13410170 (20 bp)
TTATGGTTGAAAGCCCATGGGCCAA
NONE
OsAffx.29453.1.S1_at--652--2671Chr08:19339328..19339352 (25 bp)
AAGCCCATGGGCCAAGACTTATTTT
LOC_Os08g31480
OsAffx.29453.1.S1_at--977--1391Chr08:19339314..19339338 (25 bp)
AGACTTATTTTCACCATGCTAGAAT
LOC_Os08g31480
OsAffx.29453.1.S1_at--919--9071Chr08:19339245..19339322 (25 bp)
TGCTAGAATGAGATGGACAACTGTC
LOC_Os08g31480
OsAffx.29453.1.S1_at--181--8151Chr08:19339231..19339255 (25 bp)
GGACAACTGTCCAACTTGCTGATGC
LOC_Os08g31480
OsAffx.29453.1.S1_at--491--2551Chr08:19339227..19339251 (25 bp)
AACTGTCCAACTTGCTGATGCACAA
LOC_Os08g31480
Target Sequence 
GGAGACCTCGACGATGGCCATCCGTCTCTCTTTCTCTCCTCTGACTCCAAGCAAGAGGAGAGCGCTGGAGGGCGGGGCAC
CAGAACATGGGCGGACCCAGCCCCTGGACACCCTAAACCATGGCCCGGAGCTTATGGTTGAAAGCCCATGGGCCAAGACT
TATTTTCACCATGCTAGAATGAGATGGACAACTGTCCAACTTGCTGATGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis