Browse Element(s) Details


OsAffx.29475.2.S1_at

Description tigr:9636.m03251
TID=OsAffx.29475.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g325405/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32500Os.53608.1.A1_at11/118+19996905..20000825permease, putative, expressed
LOC_Os08g32510NANA8+20003667..20004136hypothetical protein
LOC_Os08g32520Os.43236.1.S1_at9/118+20011464..20012574expressed protein
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29475.2.S1_at--555--1771NONE
ACCGTCTCCCGGCATACACTTTGAT
NONE
OsAffx.29475.2.S1_at--165--9511NONE
TCTCCCGGCATACACTTTGATCATT
NONE
OsAffx.29475.2.S1_at--461--9311Chr08:20025906..20025926 (21 bp)
TCCCGGCATACACTTTGATCATTGA
LOC_Os08g32540
OsAffx.29475.2.S1_at--986--4251NONE
CCGGCATACACTTTGATCATTGAAT
NONE
OsAffx.29475.2.S1_at--54--9871Chr08:20025898..20025922 (25 bp)
TACACTTTGATCATTGAATGCACCA
LOC_Os08g32540
OsAffx.29475.2.S1_at--796--5271NONE
GAATGCACCAACATATGTGGCCTAA
NONE
OsAffx.29475.2.S1_at--964--9011NONE
TGCACCAACATATGTGGCCTAAGTG
NONE
OsAffx.29475.2.S1_at--1153--1691NONE
ACCAACATATGTGGCCTAAGTGCTC
NONE
OsAffx.29475.2.S1_at--1159--8391Chr08:20024151..20024175 (25 bp)
GGCCTAAGTGCTCTTAACCAAATAT
LOC_Os08g32540
OsAffx.29475.2.S1_at--435--1111Chr08:20024145..20024169 (25 bp)
AGTGCTCTTAACCAAATATTTGTTC
LOC_Os08g32540
OsAffx.29475.2.S1_at--940--9791Chr08:20024137..20024161 (25 bp)
TAACCAAATATTTGTTCCATTTATG
LOC_Os08g32540
Target Sequence 
ACCGTCTCCCGGCATACACTTTGATCATTGAATGCACCAACATATGTGGCCTAAGTGCTCTTAACCAAATATTTGTTCCA
TTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29475.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis