Browse Element(s) Details


OsAffx.29492.1.S1_at

Description tigr:9636.m03359
TID=OsAffx.29492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3352011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33488Os.50641.2.S1_a_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488Os.50641.1.S1_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488OsAffx.29491.1.S1_at1/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33500NANA8+20775648..20778980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33510Os.47463.1.S1_x_at6/118+20781892..20785590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33510Os.14491.2.S1_x_at5/118+20781892..20785590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33520OsAffx.29492.1.S1_at11/118+20791650..20793954hypothetical protein
LOC_Os08g33530OsAffx.17313.1.S1_at11/118+20798456..20799247TCP family transcription factor containing protein
LOC_Os08g33540Os.32072.1.S1_at11/118+20812214..20815137ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed
LOC_Os08g33550OsAffx.24224.1.S1_at1/118+20816117..20818853transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29492.1.S1_at--379--7631Chr08:20793891..20793915 (25 bp)
GGGACTCAGATGACAAGTGGTTTTT
LOC_Os08g33520
OsAffx.29492.1.S1_at--188--10471Chr08:20793866..20793890 (25 bp)
TTAACGATTCCCCACCGCTGAAGGA
LOC_Os08g33520
OsAffx.29492.1.S1_at--1123--3351Chr08:20793854..20793878 (25 bp)
CACCGCTGAAGGACTCCGATGATGG
LOC_Os08g33520
OsAffx.29492.1.S1_at--1015--2451Chr08:20793825..20793849 (25 bp)
AACAAGGACGATGGCAATAATGATA
LOC_Os08g33520
OsAffx.29492.1.S1_at--324--6471Chr08:20793804..20793828 (25 bp)
GATAAGGACAATGACGCGACAGCAA
LOC_Os08g33520
OsAffx.29492.1.S1_at--482--871Chr08:20793758..20793782 (25 bp)
ATGGCCGAGAACAGGTGCGCTCAGT
LOC_Os08g33520
OsAffx.29492.1.S1_at--634--9151Chr08:20793743..20793767 (25 bp)
TGCGCTCAGTGGGACAAGGACAAGT
LOC_Os08g33520
OsAffx.29492.1.S1_at--711--3431Chr08:20793737..20793761 (25 bp)
CAGTGGGACAAGGACAAGTAGGCTC
LOC_Os08g33520
OsAffx.29492.1.S1_at--578--791Chr08:20791808..20791832 (25 bp)
ATGTGGCAGTCAGTGGCAGCGAATC
LOC_Os08g33520
OsAffx.29492.1.S1_at--680--1091Chr08:20791797..20791821 (25 bp)
AGTGGCAGCGAATCCGACAACGCAA
LOC_Os08g33520
OsAffx.29492.1.S1_at--984--5611Chr08:20791782..20791806 (25 bp)
GACAACGCAAGCCTCCAGAGATGAG
LOC_Os08g33520
Target Sequence 
GGGACTCAGATGACAAGTGGTTTTTTTAACGATTCCCCACCGCTGAAGGACTCCGATGATGGGGACAACAAGGACGATGG
CAATAATGATAAGGACAATGACGCGACAGCAAAACGAGGAGGAAGGCAAGGACATGGCCGAGAACAGGTGCGCTCAGTGG
GACAAGGACAAGTAGGCTCGGTGGGAGGTGGTGAGGCGGTAGGGGTGCCACCGGAGCCATGGAGATGGGCTGACGGTGGG
CAGGGTTGGCAGTGGAAGAGAGGGAGGCTATGGGTTAGGATGTGGCAGTCAGTGGCAGCGAATCCGACAACGCAAGCCTC
CAGAGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis