Browse Element(s) Details


Os.32072.1.S1_at

Description gb:AK106170.1
DB_XREF= gi:32991379
TID=Os.32072.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B12, full insert sequence.
FL= gb:AK106170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3354011/11ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33520OsAffx.29492.1.S1_at11/118+20791650..20793954hypothetical protein
LOC_Os08g33530OsAffx.17313.1.S1_at11/118+20798456..20799247TCP family transcription factor containing protein
LOC_Os08g33540Os.32072.1.S1_at11/118+20812214..20815137ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed
LOC_Os08g33550OsAffx.24224.1.S1_at1/118+20816117..20818853transposon protein, putative, Mutator sub-class
LOC_Os08g33560Os.31312.2.S1_x_at5/118+20820315..20823658retrotransposon protein, putative, unclassified
LOC_Os08g33560Os.31312.5.S1_x_at4/118+20820315..20823658retrotransposon protein, putative, unclassified
LOC_Os08g33570OsAffx.22492.1.S1_x_at1/118+20824597..20830433retrotransposon protein, putative, unclassified
LOC_Os08g33570OsAffx.22492.1.S1_at1/118+20824597..20830433retrotransposon protein, putative, unclassified
LOC_Os08g33580OsAffx.17314.1.S1_s_at11/118+20832001..20834520hypothetical protein
LOC_Os08g33580OsAffx.17314.2.S1_at10/118+20832001..20834520hypothetical protein
LOC_Os08g33580OsAffx.17314.1.S1_at8/118+20832001..20834520hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32072.1.S1_at--1146--5971Chr08:20814198..20814222 (25 bp)
GAGAAAGTTACTCCTGGTCGCCAGT
LOC_Os08g33540
Os.32072.1.S1_at--1045--7791Chr08:20814183..20814207 (25 bp)
GGTCGCCAGTCTGAATTCGATGTTA
LOC_Os08g33540
Os.32072.1.S1_at--80--2211Chr08:20812693..20812717 (25 bp)
ACAACAGGCGTGAGTACGTCGTCCA
LOC_Os08g33540
Os.32072.1.S1_at--797--9931Chr08:20812679..20812703 (25 bp)
TACGTCGTCCAAGTCCTGATGAAAG
LOC_Os08g33540
Os.32072.1.S1_at--44--7991Chr08:20812645..20812669 (25 bp)
GGATGACCGTCGACAATGCCGTCAA
LOC_Os08g33540
Os.32072.1.S1_at--956--4011Chr08:20812626..20812650 (25 bp)
CGTCAACATCATGCAGGAGGCTCAT
LOC_Os08g33540
Os.32072.1.S1_at--280--8011Chr08:20812611..20812635 (25 bp)
GGAGGCTCATGTAAACGGGCTGTCA
LOC_Os08g33540
Os.32072.1.S1_at--644--8731Chr08:20812591..20812615 (25 bp)
TGTCAGTGGTGATCATCTGCTCTCA
LOC_Os08g33540
Os.32072.1.S1_at--950--2951Chr08:20812529..20812553 (25 bp)
AATGGCCTCCGGAGCTCGATTGAAC
LOC_Os08g33540
Os.32072.1.S1_at--709--51Chr08:20812511..20812535 (25 bp)
ATTGAACCTGCGAGTGGTGGCTGCT
LOC_Os08g33540
Os.32072.1.S1_at--952--1451Chr08:20812484..20812508 (25 bp)
AGAAGAGGCTCTGCTGTTTCGATGC
LOC_Os08g33540
Target Sequence 
GAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAATCCCGCAAAATGACGCCTCCGTANCGAGTCCTCCT
CCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATG
CCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCAC
TGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGT
TTCGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis