Browse Element(s) Details


OsAffx.17313.1.S1_at

Description tigr:9636.m03360
TID=OsAffx.17313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PlCYC1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3353011/11TCP family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33488Os.50641.2.S1_a_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488Os.50641.1.S1_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488OsAffx.29491.1.S1_at1/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33500NANA8+20775648..20778980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33510Os.47463.1.S1_x_at6/118+20781892..20785590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33510Os.14491.2.S1_x_at5/118+20781892..20785590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33520OsAffx.29492.1.S1_at11/118+20791650..20793954hypothetical protein
LOC_Os08g33530OsAffx.17313.1.S1_at11/118+20798456..20799247TCP family transcription factor containing protein
LOC_Os08g33540Os.32072.1.S1_at11/118+20812214..20815137ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed
LOC_Os08g33550OsAffx.24224.1.S1_at1/118+20816117..20818853transposon protein, putative, Mutator sub-class
LOC_Os08g33560Os.31312.2.S1_x_at5/118+20820315..20823658retrotransposon protein, putative, unclassified
LOC_Os08g33560Os.31312.5.S1_x_at4/118+20820315..20823658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17313.1.S1_at--39--8371Chr08:20798944..20798968 (25 bp)
GGCGGATCAGCATTCCTCGGCCATG
LOC_Os08g33530
OsAffx.17313.1.S1_at--594--3951Chr08:20798946..20798970 (25 bp)
CGGATCAGCATTCCTCGGCCATGGC
LOC_Os08g33530
OsAffx.17313.1.S1_at--912--9371Chr08:20799017..20799041 (25 bp)
TCGAGCACCACCAATGCGTCGTCGG
LOC_Os08g33530
OsAffx.17313.1.S1_at--21--5951Chr08:20799019..20799043 (25 bp)
GAGCACCACCAATGCGTCGTCGGCG
LOC_Os08g33530
OsAffx.17313.1.S1_at--300--4611Chr08:20799047..20799071 (25 bp)
GCGAGAAACAGAGACCACGACGGAT
LOC_Os08g33530
OsAffx.17313.1.S1_at--49--3371Chr08:20799148..20799172 (25 bp)
CACCGAGCAGCCGATGGACGGATTG
LOC_Os08g33530
OsAffx.17313.1.S1_at--522--4511Chr08:20799157..20799181 (25 bp)
GCCGATGGACGGATTGGAGTACTAC
LOC_Os08g33530
OsAffx.17313.1.S1_at--667--6231Chr08:20799160..20799184 (25 bp)
GATGGACGGATTGGAGTACTACTTC
LOC_Os08g33530
OsAffx.17313.1.S1_at--78--8091Chr08:20799163..20799187 (25 bp)
GGACGGATTGGAGTACTACTTCCAA
LOC_Os08g33530
OsAffx.17313.1.S1_at--822--8031Chr08:20799172..20799196 (25 bp)
GGAGTACTACTTCCAATACTACAAT
LOC_Os08g33530
OsAffx.17313.1.S1_at--376--3191Chr08:20799185..20799209 (25 bp)
CAATACTACAATCATCTGGAGGAGA
LOC_Os08g33530
Target Sequence 
GGCGGATCAGCATTCCTCGGCCATGGCCGCCGCCGCAGCATCGGCTGCGAAGGAGAAAGGGGAGGCGAGCTCGTCGAGCA
CCACCAATGCGTCGTCGGCGCGGGCGAGAAACAGAGACCACGACGGATCATCGCCGGTGGCGCCCATGGACGAGCGCGGG
CGCCGCGGTGTCGAGCTCGACTGGACGGCGGCGGCGGCGGCGAGCACCGAGCAGCCGATGGACGGATTGGAGTACTACTT
CCAATACTACAATCATCTGGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis