Browse Element(s) Details


OsAffx.29544.1.S1_x_at

Description tigr:9636.m03621
TID=OsAffx.29544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3599010/11hypothetical protein
LOC_Os12g061404/11hypothetical protein
LOC_Os12g416501/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g221401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29544.1.S1_x_at--192--9313Chr12:2884916..2884939 (24 bp)
TCCCCTGCTCTGCAGTCTGCAAGAG
LOC_Os12g06140
OsAffx.29544.1.S1_x_at--635--4191Chr08:22552440..22552464 (25 bp)
CCCTGCTCTGCAGTCTGCAAGAGAA
LOC_Os08g35990
OsAffx.29544.1.S1_x_at--113--3851Chr08:22552447..22552471 (25 bp)
CTGCAGTCTGCAAGAGAAGACCGGA
LOC_Os08g35990
OsAffx.29544.1.S1_x_at--206--2774Chr12:2885023..2885046 (24 bp)
AAGAGCCCGCGGGAGTCGAGGTCGT
LOC_Os12g06140
OsAffx.29544.1.S1_x_at--914--3691Chr08:22552605..22553054 (25 bp)
CGCGGCGGTGGGTGAAAACAAGACA
LOC_Os08g35990
OsAffx.29544.1.S1_x_at--500--3971Chr08:22552610..22553059 (25 bp)
CGGTGGGTGAAAACAAGACAGAGTT
LOC_Os08g35990
OsAffx.29544.1.S1_x_at--475--9131Chr08:22553059..22553262 (25 bp)
TGCTGTGCTTCTCCTTGCACGAAGA
LOC_Os08g35990
OsAffx.29544.1.S1_x_at--765--10591Chr12:2885637..2885843 (25 bp)
TTCTCCTTGCACGAAGACGACGGGC
LOC_Os12g06140
OsAffx.29544.1.S1_x_at--939--5751Chr08:22553264..22553288 (25 bp)
GACGGGCTCATCGAGCTGCTCTGGT
LOC_Os08g35990
OsAffx.29544.1.S1_x_at--1155--3193Chr12:25736470..25736493 (24 bp)
CAATGGCCACGTCGTCATGCAGAGT
LOC_Os12g41650
OsAffx.29544.1.S1_x_at--666--9612Chr12:2885877..2885902 (25 bp)
TCATGCAGAGTCAGGCGCCCGGAAG
LOC_Os12g06140
Target Sequence 
TCCCCTGCTCTGCAGTCTGCAAGAGAAGACCGGAGCGGTGGCGCGCGAAGTCGGCAGGGCGACGGCGGCCCGAGCGGCAG
CGCGTGAAGCCGGCGAGGCGGCGGCGAAGAGCCCGCGGGAGTCGAGGTCGTCCGGGGAAGCAGTGGCGACGGCGGCCGGA
CCGGCGACGCGGCGGTGGGTGAAAACAAGACAGAGTTGCTGTGCTTCTCCTTGCACGAAGACGACGGGCTCATCGAGCTG
CTCTGGTGCAATGGCCACGTCGTCATGCAGAGTCAGGCGCCCGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29544.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis