Browse Element(s) Details


OsAffx.29564.1.S1_at

Description tigr:9636.m03683
TID=OsAffx.29564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3666011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36630Os.18654.1.S1_x_at11/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36630Os.18654.2.S1_at10/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36640OsAffx.29563.1.S1_at11/118+22993581..22993838hypothetical protein
LOC_Os08g36650OsAffx.10905.2.S1_at7/118+22996618..22998928retrotransposon protein, putative, unclassified
LOC_Os08g36660OsAffx.29564.1.S1_at11/118+23000788..23003041expressed protein
LOC_Os08g36670OsAffx.22940.3.S1_at10/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.3.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.1.S1_s_at6/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.3.S1_x_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.2.S1_s_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.18.S1_x_at3/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_at2/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.31552.2.S1_at1/118+23004725..23011995hypothetical protein
LOC_Os08g36680OsAffx.17361.1.S1_at10/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36680OsAffx.27787.1.S1_at1/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36690NANA8+23023715..23024014hypothetical protein
LOC_Os08g36700OsAffx.6046.1.S1_at11/118+23025454..23026689HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29564.1.S1_at--552--9371Chr08:23001517..23001541 (25 bp)
TCGAGTCTTCGCTTGTATCAACGCA
LOC_Os08g36660
OsAffx.29564.1.S1_at--1134--6771Chr08:23001465..23001489 (25 bp)
GTTATTCGGAACCTCCTAGTGGCAG
LOC_Os08g36660
OsAffx.29564.1.S1_at--610--2131Chr08:23001339..23001432 (25 bp)
ACAGTGTCGGAACTCAGTGTCGCGC
LOC_Os08g36660
OsAffx.29564.1.S1_at--1029--8151Chr08:23001298..23001322 (25 bp)
GGAAAAGCTGGATATCTCCCTGCAG
LOC_Os08g36660
OsAffx.29564.1.S1_at--40--1531Chr08:23001275..23001299 (25 bp)
AGCATGAGGCCACGACTTTTACTGT
LOC_Os08g36660
OsAffx.29564.1.S1_at--1050--1291Chr08:23001163..23001184 (22 bp)
AGATGCGAACGACGGCTCCCAGATG
LOC_Os08g36660
OsAffx.29564.1.S1_at--905--1971Chr08:23000941..23000965 (25 bp)
ACTGAACCTCTGTCGCAGGATGGGA
LOC_Os08g36660
OsAffx.29564.1.S1_at--319--6231Chr08:23000923..23000947 (25 bp)
GATGGGACTGACACCACCGGAAGGA
LOC_Os08g36660
OsAffx.29564.1.S1_at--653--2871Chr08:23000885..23000909 (25 bp)
AAGTGGTGTCTGACTTCAAGGCCAT
LOC_Os08g36660
OsAffx.29564.1.S1_at--187--1291Chr08:23000839..23000863 (25 bp)
AGATGCAATCGACGCGCTTGAACAT
LOC_Os08g36660
OsAffx.29564.1.S1_at--428--8971Chr08:23000821..23000845 (25 bp)
TGAACATCTCTTCGGACTCAACAAG
LOC_Os08g36660
Target Sequence 
TCGAGTCTTCGCTTGTATCAACGCAGCAATCATGGCGGCCACGGCGGAAAGGGTTATTCGGAACCTCCTAGTGGCAGCTG
GCGTAGCAGTGGCGATCAACGAGCTTGCCACAGTGTCGGAACTCAGTGTCGCGCAGCTGGCCGCCCAGCTGGAAAAGCTG
GATATCTCCCTGCAGCATGAGGCCACGACTTTTACTGTCGTCAACGACATCCCGGTGGGGCTGATGTCCGACAACGGCGG
AATGATGACGGTGCCCAACCTCGGCACCCTTGATCCGATGGCGGACGCAGATGCGAACGACGGCTCCCAGATGCAGACAC
CAGCGCCACCATCTCCAGCAGGCGAAGGAAGACGGAGGAGTCCAAGGCTGGCTGCGAAGCCGCTAGCCGGCCTACCGATG
TCGCTGAGGGCGCAACTGAACCTCTGTCGCAGGATGGGACTGACACCACCGGAAGGAATCCTCACCGAGAAAGTGGTGTC
TGACTTCAAGGCCATGTTCAACGCACCTCTCCCCCAAGATGCAATCGACGCGCTTGAACATCTCTTCGGACTCAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis