Browse Element(s) Details


OsAffx.29590.1.S1_at

Description tigr:9636.m03880
TID=OsAffx.29590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed
LOC_Os08g38490OsAffx.6069.1.S1_x_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38490OsAffx.6069.1.S1_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29590.1.S1_at--962--8831Chr08:24231589..24231613 (25 bp)
TGATAGGGATCTACCTCTTCGACGA
LOC_Os08g38510
OsAffx.29590.1.S1_at--978--9951Chr08:24231600..24231624 (25 bp)
TACCTCTTCGACGACCTAACGAGAG
LOC_Os08g38510
OsAffx.29590.1.S1_at--301--5771Chr08:24231609..24231633 (25 bp)
GACGACCTAACGAGAGGGATCAGCA
LOC_Os08g38510
OsAffx.29590.1.S1_at--218--3851Chr08:24231642..24231666 (25 bp)
CTGCACGACTGCCAGAACAGTTGAA
LOC_Os08g38510
OsAffx.29590.1.S1_at--457--2491Chr08:24231657..24231681 (25 bp)
AACAGTTGAACACAGGCGTCACCGT
LOC_Os08g38510
OsAffx.29590.1.S1_at--1162--10731Chr08:24231662..24231686 (25 bp)
TTGAACACAGGCGTCACCGTCGGCA
LOC_Os08g38510
OsAffx.29590.1.S1_at--1--3951Chr08:24231682..24231856 (25 bp)
CGGCACCGAGGGATCACAGCAAGTT
LOC_Os08g38510
OsAffx.29590.1.S1_at--1142--7951Chr08:24231842..24231866 (25 bp)
GGATCACAGCAAGTTCAGCTTCGAT
LOC_Os08g38510
OsAffx.29590.1.S1_at--949--5171Chr08:24231850..24231874 (25 bp)
GCAAGTTCAGCTTCGATCGATCGGC
LOC_Os08g38510
OsAffx.29590.1.S1_at--290--6391Chr08:24231864..24231888 (25 bp)
GATCGATCGGCTACCTGCCGGCGGC
LOC_Os08g38510
OsAffx.29590.1.S1_at--988--5091Chr08:24231913..24231937 (25 bp)
GCACTTCCCCGTCAAGGGTGTTCGA
LOC_Os08g38510
Target Sequence 
TGATAGGGATCTACCTCTTCGACGACCTAACGAGAGGGATCAGCAGGGAGGTGCTGCACGACTGCCAGAACAGTTGAACA
CAGGCGTCACCGTCGGCACCGAGGGATCACAGCAAGTTCAGCTTCGATCGATCGGCTACCTGCCGGCGGCGTCGACGGGG
CGGTACAAGATCGTGCACTTCCCCGTCAAGGGTGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis