Browse Element(s) Details


OsAffx.29622.1.S1_at

Description tigr:9636.m04223
TID=OsAffx.29622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4157011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41530Os.49943.1.S1_at10/118+26100851..26105664Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41540Os.49943.1.S1_at1/118+26107480..26111135Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29622.1.S1_at--530--10831Chr08:26129015..26129039 (25 bp)
TTGGTGCATGGTTGGGTAGCTAATC
LOC_Os08g41570
OsAffx.29622.1.S1_at--1140--1391Chr08:26129058..26129082 (25 bp)
AGACGGTCAAGTCCTTCTCTTCTGA
LOC_Os08g41570
OsAffx.29622.1.S1_at--155--9251Chr08:26129069..26129093 (25 bp)
TCCTTCTCTTCTGATGACCTGGAAT
LOC_Os08g41570
OsAffx.29622.1.S1_at--568--8511Chr08:26129088..26129112 (25 bp)
TGGAATCACACATTTCATCCCTTGA
LOC_Os08g41570
OsAffx.29622.1.S1_at--274--9611Chr08:26129102..26129126 (25 bp)
TCATCCCTTGATGCTCGGAGTGATA
LOC_Os08g41570
OsAffx.29622.1.S1_at--550--10111Chr08:26129389..26129409 (21 bp)
TATGGATATCAGTCTTTATGCCAAG
LOC_Os08g41570
OsAffx.29622.1.S1_at--1078--5671Chr08:26129451..26129474 (24 bp)
GACATATTCAATCTTATTCGCGAGA
LOC_Os08g41570
OsAffx.29622.1.S1_at--478--6511Chr08:26129621..26129645 (25 bp)
GATATATTAGATGCTTACCCCAAAG
LOC_Os08g41570
OsAffx.29622.1.S1_at--130--8111Chr08:26129745..26129769 (25 bp)
GGACGAGGAACCAATTTACTTGAAT
LOC_Os08g41570
OsAffx.29622.1.S1_at--721--5391Chr08:26129993..26130017 (25 bp)
GAAGCAGTGTTATCGAGACACGCGT
LOC_Os08g41570
OsAffx.29622.1.S1_at--894--1411Chr08:26130008..26130032 (25 bp)
AGACACGCGTGTCAGTGTGTCGACT
LOC_Os08g41570
Target Sequence 
TTGGTGCATGGTTGGGTAGCTAATCCCGAGGATAACATCTATGAGACGGTCAAGTCCTTCTCTTCTGATGACCTGGAATC
ACACATTTCATCCCTTGATGCTCGGAGTGATAATTCTGAAGCTGCACAGAGGGATAGGGATGCAAGCAAAAATTTGTTGG
CTGCAAGGAATCAGTTTACAAGTTATGGATATCAGTCTTTATGCCAAGGATTAGGGAAGGATGAATATGCTATTCTTTAC
CGGGGCGATGACATATTCAATCTTATTCGCGAGAAAGATGGATCCATTTTGATCCTGGAAACAGACACAGATATATTAGA
TGCTTACCCCAAAGCAAGGTGGAGGATTCTGGAAGAGGTGGACGAGGAACCAATTTACTTGAATTGCAATTACATTCCAC
TTAAGAATCAACCCCACATCGCTAAAGTAAAACGATGGTACTTGGAGATGAAGTCAAAGAAGAAAATTAATGAGGCTTCA
AGCAACGAAGGTGCTGGTCAGAAGCAGTGTTATCGAGACACGCGTGTCAGTGTGTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis