Browse Element(s) Details


OsAffx.29628.1.S1_at

Description tigr:9636.m04275
TID=OsAffx.29628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4207011/11hypothetical protein
LOC_Os06g398901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein
LOC_Os08g42070OsAffx.29628.1.S1_at11/118+26435425..26435929hypothetical protein
LOC_Os08g42080OsAffx.17468.1.S1_s_at11/118+26439536..26442049ACT domain containing protein, expressed
LOC_Os08g42090OsAffx.19542.3.S1_x_at4/118+26448415..26452637retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29628.1.S1_at--480--1911Chr08:26435765..26435789 (25 bp)
ACGTGTAGAGTAGCGCTGGTCAGCC
LOC_Os08g42070
OsAffx.29628.1.S1_at--1062--1333Chr08:26435771..26435795 (25 bp)
AGAGTAGCGCTGGTCAGCCGTCCAG
LOC_Os08g42070
OsAffx.29628.1.S1_at--287--7811Chr08:26435782..26435806 (25 bp)
GGTCAGCCGTCCAGCGCCAAACGAG
LOC_Os08g42070
OsAffx.29628.1.S1_at--126--2374Chr08:26435800..26435824 (25 bp)
AAACGAGACGATCCTCGACACCCGG
LOC_Os08g42070
OsAffx.29628.1.S1_at--212--1392Chr08:26435805..26435829 (25 bp)
AGACGATCCTCGACACCCGGCAAGA
LOC_Os08g42070
OsAffx.29628.1.S1_at--720--9351Chr08:26435814..26435838 (25 bp)
TCGACACCCGGCAAGAGCTGTACGT
LOC_Os08g42070
OsAffx.29628.1.S1_at--658--2171Chr08:26435817..26435841 (25 bp)
ACACCCGGCAAGAGCTGTACGTGAA
LOC_Os08g42070
OsAffx.29628.1.S1_at--827--1611Chr08:26435829..26435853 (25 bp)
AGCTGTACGTGAAGCACTGCATCCC
LOC_Os08g42070
OsAffx.29628.1.S1_at--452--6991Chr08:26435833..26435857 (25 bp)
GTACGTGAAGCACTGCATCCCAGAT
LOC_Os08g42070
OsAffx.29628.1.S1_at--927--7351Chr08:26435837..26435861 (25 bp)
GTGAAGCACTGCATCCCAGATAAGG
LOC_Os08g42070
OsAffx.29628.1.S1_at--956--1971Chr08:26435844..26435868 (25 bp)
ACTGCATCCCAGATAAGGAGAAACT
LOC_Os08g42070
Target Sequence
ACGTGTAGAGTAGCGCTGGTCAGCCGTCCAGCGCCAAACGAGACGATCCTCGACACCCGGCAAGAGCTGTACGTGAAGCA
CTGCATCCCAGATAAGGAGAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis