Browse Element(s) Details


OsAffx.29638.1.S1_at

Description tigr:9636.m04359
TID=OsAffx.29638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4284011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42760Os.54706.1.S1_at11/118+26931981..26935339Bicoid-interacting protein 3 containing protein, expressed
LOC_Os08g42770OsAffx.29636.1.S1_at11/118+26935872..26936669hypothetical protein
LOC_Os08g42780OsAffx.8265.1.S1_x_at3/118+26937096..26937437hypothetical protein
LOC_Os08g42790NANA8+26938025..26938534hypothetical protein
LOC_Os08g42800Os.57182.1.S1_at10/118+26939320..26939809expressed protein
LOC_Os08g42810OsAffx.17482.1.S1_at11/118+26942273..26942485hypothetical protein
LOC_Os08g42820OsAffx.6115.1.S1_at10/118+26944047..26945388hypothetical protein
LOC_Os08g42830Os.14919.1.S1_at4/118+26947842..26951738Transposable element protein, putative, MuDR
LOC_Os08g42840OsAffx.29638.1.S1_at11/118+26953583..26956405Leucine Rich Repeat family protein
LOC_Os08g42850Os.8230.1.S1_at11/118+26958008..26960497FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor, putative, expressed
LOC_Os08g42860OsAffx.20354.1.S1_at2/118+26965938..26968659retrotransposon protein, putative, unclassified
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29638.1.S1_at--927--6151Chr08:26955813..26955837 (25 bp)
GAGGTTACAGACTTACTTTCGTGAT
LOC_Os08g42840
OsAffx.29638.1.S1_at--401--251Chr08:26955836..26955860 (25 bp)
ATATCATTCCTCCTTACCAGTATTG
LOC_Os08g42840
OsAffx.29638.1.S1_at--183--5711Chr08:26955918..26955942 (25 bp)
GACTAGCGTCCTTAAATCTATCAAG
LOC_Os08g42840
OsAffx.29638.1.S1_at--1033--3911Chr08:26955983..26956007 (25 bp)
CTGGCCTGGTTAGAATCACTTGATC
LOC_Os08g42840
OsAffx.29638.1.S1_at--379--891Chr08:26956027..26956051 (25 bp)
AGGCCCAATTCCTCAGAGCATGAAG
LOC_Os08g42840
OsAffx.29638.1.S1_at--858--8911Chr08:26956065..26956089 (25 bp)
TGAGCTTCCTGAATCTATCCTACAA
LOC_Os08g42840
OsAffx.29638.1.S1_at--527--7571Chr08:26956173..26956197 (25 bp)
GGGCTCCACTTACAAGAAGCTGCCA
LOC_Os08g42840
OsAffx.29638.1.S1_at--684--9871Chr08:26956247..26956271 (25 bp)
TACATGTTTACTCTGCTGGGATTTG
LOC_Os08g42840
OsAffx.29638.1.S1_at--495--7671Chr08:26956264..26956288 (25 bp)
GGGATTTGCGTTTGGATTCTGCACC
LOC_Os08g42840
OsAffx.29638.1.S1_at--790--4011Chr08:26956288..26956312 (25 bp)
CGTTTCAACCACCTTCATATTCAGT
LOC_Os08g42840
OsAffx.29638.1.S1_at--1091--3571Chr08:26956303..26956327 (25 bp)
CATATTCAGTGCAGCTTCCAGGAGA
LOC_Os08g42840
Target Sequence 
GAGGTTACAGACTTACTTTCGTGATATCATTCCTCCTTACCAGTATTGATCTTTCAGAGAACCATTTAACCGGGGAGATA
CCCAGTGAAATAGGAAATCTTTACAGACTAGCGTCCTTAAATCTATCAAGGAATCACATTGAGGGAAGTATTCCTGAAAC
AATCGGAAATCTGGCCTGGTTAGAATCACTTGATCTCTCATGGAATGATCTATCAGGCCCAATTCCTCAGAGCATGAAGT
CACTGTTATTTTTGAGCTTCCTGAATCTATCCTACAACCACCTCTCAGGAAAGATACCATATGGAAACCAACTTATGACT
TTTGAAGGAGACTCTTTTTTGGGAAATGAAGATCTCTGTGGGGCTCCACTTACAAGAAGCTGCCACAAGGACAGCGACAA
ACACAAACATCATGAGATTTTTGACACGCTGACATACATGTTTACTCTGCTGGGATTTGCGTTTGGATTCTGCACCGTTT
CAACCACCTTCATATTCAGTGCAGCTTCCAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis