Browse Element(s) Details


OsAffx.29691.1.S1_at

Description tigr:9637.m00099
TID=OsAffx.29691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0255011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02500Os.26886.3.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.1.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein
LOC_Os09g02530Os.27750.1.A1_at11/119+1054332..1055393expressed protein
LOC_Os09g02530OsAffx.17537.1.S1_x_at10/119+1054332..1055393expressed protein
LOC_Os09g02540OsAffx.29690.1.S1_at11/119+1058839..1059630expressed protein
LOC_Os09g02550OsAffx.29691.1.S1_at11/119+1060676..1061128hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_x_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02570OsAffx.29693.1.S1_x_at11/119+1069950..1070345hypothetical protein
LOC_Os09g02580OsAffx.29693.1.S1_x_at3/119+1074066..1074317hypothetical protein
LOC_Os09g02580OsAffx.6499.1.S1_x_at1/119+1074066..1074317hypothetical protein
LOC_Os09g02589NANA9+1084396..1084533NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29691.1.S1_at--257--471Chr09:1061058..1061082 (25 bp)
ATCTCGCCCAAAGGCAGCGCAAGGA
LOC_Os09g02550
OsAffx.29691.1.S1_at--166--9411Chr09:1061007..1061031 (25 bp)
TCGTCGTAGGATCTCCGAGCAATGG
LOC_Os09g02550
OsAffx.29691.1.S1_at--938--3331Chr09:1060966..1060990 (25 bp)
CACTGGAGGCAACGCAGACGACGAT
LOC_Os09g02550
OsAffx.29691.1.S1_at--368--871Chr09:1060933..1060957 (25 bp)
ATGGCGGTGCAGACCACGATGACGA
LOC_Os09g02550
OsAffx.29691.1.S1_at--718--3411Chr09:1060873..1060897 (25 bp)
CAGACGGACTTCAGCGAGGACAACA
LOC_Os09g02550
OsAffx.29691.1.S1_at--298--2491Chr09:1060852..1060876 (25 bp)
AACAGCCGCAACAGTGGCTGCGTGG
LOC_Os09g02550
OsAffx.29691.1.S1_at--197--8631Chr09:1060826..1060850 (25 bp)
TGGTGGGCTCAATGATAACCGCAGC
LOC_Os09g02550
OsAffx.29691.1.S1_at--810--5991Chr09:1060797..1060821 (25 bp)
GAGACGACCACGAGAGGCAACACAA
LOC_Os09g02550
OsAffx.29691.1.S1_at--801--2191Chr09:1060776..1060800 (25 bp)
ACAAACGACAGTTGCGTGGATGGCG
LOC_Os09g02550
OsAffx.29691.1.S1_at--720--4691Chr09:1060740..1060764 (25 bp)
GCGGCAGCTATAGGGCGACCATGAA
LOC_Os09g02550
OsAffx.29691.1.S1_at--274--5851Chr09:1060724..1060748 (25 bp)
GACCATGAACGCCTCGTACGAGCAG
LOC_Os09g02550
Target Sequence 
ATCTCGCCCAAAGGCAGCGCAAGGAGGAGCCAGCGGAGGGGGCTGAGGACCTCGTCGTAGGATCTCCGAGCAATGGGGAC
AGACGAGGCGAGCACTGGAGGCAACGCAGACGACGATTGCGACGGATGGCGGTGCAGACCACGATGACGATGGCAGCCGC
AGCAGTGGCTGCGTGGATGGCGGGCCAGACGGACTTCAGCGAGGACAACAGCCGCAACAGTGGCTGCGTGGATGGTGGGC
TCAATGATAACCGCAGCGGGCGAGACGACCACGAGAGGCAACACAAACGACAGTTGCGTGGATGGCGGGCTCGAGGAGGC
GGCAGCTATAGGGCGACCATGAACGCCTCGTACGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis