Browse Element(s) Details


OsAffx.29698.1.S1_at

Description tigr:9637.m00135
TID=OsAffx.29698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0292011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02870Os.47463.1.S1_x_at6/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02870Os.14491.2.S1_x_at4/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02880OsAffx.29697.1.S1_at10/119+1351117..1352234hypothetical protein
LOC_Os09g02890OsAffx.17545.1.S1_at11/119+1353909..1355501AC transposase, putative
LOC_Os09g02900NANA9+1356426..1358374transposon protein, putative, Mutator sub-class
LOC_Os09g02910OsAffx.6157.2.S1_at10/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.1.S1_x_at4/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.2296.1.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.2.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.7706.1.S1_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02920OsAffx.29698.1.S1_at11/119+1371217..1373733hypothetical protein
LOC_Os09g02920OsAffx.22250.2.S1_x_at1/119+1371217..1373733hypothetical protein
LOC_Os09g02930NANA9+1374529..1376209retrotransposon protein, putative, unclassified
LOC_Os09g02940OsAffx.16111.1.S1_at1/119+1376970..1377983retrotransposon protein, putative, unclassified
LOC_Os09g02940OsAffx.20615.1.S1_at1/119+1376970..1377983retrotransposon protein, putative, unclassified
LOC_Os09g02950NANA9+1380149..1387439retrotransposon protein, putative, unclassified
LOC_Os09g02960NANA9+1389987..1394882retrotransposon protein, putative, unclassified
LOC_Os09g02970NANA9+1395123..1395528pol protein, putative
LOC_Os09g02980NANA9+1397351..1398655retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29698.1.S1_at--676--1591Chr09:1372908..1372932 (25 bp)
AGCTGCACCGGTTAATTTCCCTGAT
LOC_Os09g02920
OsAffx.29698.1.S1_at--606--3951Chr09:1372916..1372940 (25 bp)
CGGTTAATTTCCCTGATCCTATCAA
LOC_Os09g02920
OsAffx.29698.1.S1_at--833--4271Chr09:1372927..1372951 (25 bp)
CCTGATCCTATCAATTCTCTTTTTC
LOC_Os09g02920
OsAffx.29698.1.S1_at--995--10371Chr09:1372947..1372971 (25 bp)
TTTTCAGTTTTCAACCGATGCTAAC
LOC_Os09g02920
OsAffx.29698.1.S1_at--364--3731Chr09:1372967..1372991 (25 bp)
CTAACTTGTACTCACGTTTTCAGCC
LOC_Os09g02920
OsAffx.29698.1.S1_at--480--3211Chr09:1373021..1373045 (25 bp)
CAAGTGAAAGTACTCCATCGGTTAT
LOC_Os09g02920
OsAffx.29698.1.S1_at--30--1191Chr09:1373029..1373053 (25 bp)
AGTACTCCATCGGTTATAGGAAGTC
LOC_Os09g02920
OsAffx.29698.1.S1_at--670--4731Chr09:1373095..1373482 (25 bp)
GCTGTCCCTCGTGAAAGGAGAGATC
LOC_Os09g02920
OsAffx.29698.1.S1_at--557--2651Chr09:1373498..1373522 (25 bp)
AAGCCAACAGAACGTCCATCAATGA
LOC_Os09g02920
OsAffx.29698.1.S1_at--1003--8191Chr09:1373597..1373621 (25 bp)
GGAAGATAGAACTCATAGCTGGACT
LOC_Os09g02920
OsAffx.29698.1.S1_at--734--9591Chr09:1373609..1373633 (25 bp)
TCATAGCTGGACTAGAGCAATGCAA
LOC_Os09g02920
Target Sequence 
AGCTGCACCGGTTAATTTCCCTGATCCTATCAATTCTCTTTTTCAGTTTTCAACCGATGCTAACTTGTACTCACGTTTTC
AGCCCCCTCGACATTCAACTCCTGTCTTTGAATCAAGTGAAAGTACTCCATCGGTTATAGGAAGTCATCATGTAGAAGAA
GAAGAAGAAGAAGTAGCACCAACTCCTGCTGTCCCTCGTGAAAGGAGAGATCTTGAAGCAACCATCCAAGCCAACAGAAC
GTCCATCAATGAAGAAAAAGCTAAGCTGGATGAGTTGGAGGCTGGTCCAAGTGCAACTCAAACCAACATTGATCAGCTAA
ATAAATGGAAGATAGAACTCATAGCTGGACTAGAGCAATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis