Browse Element(s) Details


OsAffx.29706.1.S1_at

Description tigr:9637.m00200
TID=OsAffx.29706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03724NANA9+1883879..1884086NA
LOC_Os09g03740OsAffx.6163.1.S1_x_at11/119+1889090..1889491hypothetical protein
LOC_Os09g03740OsAffx.5830.1.S1_x_at1/119+1889090..1889491hypothetical protein
LOC_Os09g03750Os.52617.1.S1_at11/119+1891170..1900087Ankyrin-1, putative, expressed
LOC_Os09g03760OsAffx.29706.1.S1_at11/119+1904065..1904767hypothetical protein
LOC_Os09g03769NANA9+1911605..1912062NA
LOC_Os09g03780NANA9+1916710..1918670expressed protein
LOC_Os09g03790NANA9+1920818..1921186hypothetical protein
LOC_Os09g03800OsAffx.6164.1.S1_at11/119+1924653..1927064hypothetical protein
LOC_Os09g03800OsAffx.31780.1.S1_at1/119+1924653..1927064hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29706.1.S1_at--835--351Chr09:1904286..1904310 (25 bp)
ATAAGCTATCATACTCTGAAGGATA
LOC_Os09g03760
OsAffx.29706.1.S1_at--684--4511Chr09:1904205..1904229 (25 bp)
GCCGAAAGGCGTAATAAGCAAGCTT
LOC_Os09g03760
OsAffx.29706.1.S1_at--98--3091Chr09:1904193..1904217 (25 bp)
AATAAGCAAGCTTTCCCCACTAAAG
LOC_Os09g03760
OsAffx.29706.1.S1_at--665--9291Chr09:1904180..1904204 (25 bp)
TCCCCACTAAAGCTCTAAAGACCAA
LOC_Os09g03760
OsAffx.29706.1.S1_at--797--2771Chr09:1904163..1904187 (25 bp)
AAGACCAATGAGAATATCACTGATG
LOC_Os09g03760
OsAffx.29706.1.S1_at--311--251Chr09:1904150..1904174 (25 bp)
ATATCACTGATGAGCCCAATGAGTC
LOC_Os09g03760
OsAffx.29706.1.S1_at--1099--5871Chr09:1904139..1904163 (25 bp)
GAGCCCAATGAGTCAAGTGCCACCA
LOC_Os09g03760
OsAffx.29706.1.S1_at--835--6091Chr09:1904130..1904154 (25 bp)
GAGTCAAGTGCCACCATCGTGTCCA
LOC_Os09g03760
OsAffx.29706.1.S1_at--8--7451Chr09:1904112..1904136 (25 bp)
GTGTCCAAGCTTCGCCATAAGTCTA
LOC_Os09g03760
OsAffx.29706.1.S1_at--698--3631Chr09:1904103..1904127 (25 bp)
CTTCGCCATAAGTCTAGGCATGAGC
LOC_Os09g03760
OsAffx.29706.1.S1_at--238--9791Chr09:1904095..1904119 (25 bp)
TAAGTCTAGGCATGAGCAAGAGGAC
LOC_Os09g03760
Target Sequence 
ATAAGCTATCATACTCTGAAGGATAAATGGTCGATTAGAGAATTAATAAGTCATGATGTTAATGAGGAAGAGCAACAAAA
TGCCGAAAGGCGTAATAAGCAAGCTTTCCCCACTAAAGCTCTAAAGACCAATGAGAATATCACTGATGAGCCCAATGAGT
CAAGTGCCACCATCGTGTCCAAGCTTCGCCATAAGTCTAGGCATGAGCAAGAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis