Browse Element(s) Details


OsAffx.6163.1.S1_x_at

Description tigr:9637.m00198
TID=OsAffx.6163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0374011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03700Os.31312.2.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.31312.5.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.28943.1.S1_x_at1/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03710OsAffx.22492.1.S1_x_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03710OsAffx.22492.1.S1_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03724NANA9+1883879..1884086NA
LOC_Os09g03740OsAffx.6163.1.S1_x_at11/119+1889090..1889491hypothetical protein
LOC_Os09g03740OsAffx.5830.1.S1_x_at1/119+1889090..1889491hypothetical protein
LOC_Os09g03750Os.52617.1.S1_at11/119+1891170..1900087Ankyrin-1, putative, expressed
LOC_Os09g03760OsAffx.29706.1.S1_at11/119+1904065..1904767hypothetical protein
LOC_Os09g03769NANA9+1911605..1912062NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6163.1.S1_x_at--483--3311Chr09:1889122..1889146 (25 bp)
CACAGCAGCAGATGAGGAGGACGTC
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--469--4691Chr09:1889157..1889181 (25 bp)
GCGGCGGAAAGTCAGCTCCGGCCGT
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--994--4671Chr09:1889160..1889184 (25 bp)
GCGGAAAGTCAGCTCCGGCCGTGGC
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--49--4071Chr09:1889194..1889218 (25 bp)
CGAGGTCGGAACTGGCTGCGGCGGG
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--400--8271Chr09:1889288..1889312 (25 bp)
GGCAGGGAAGAATCAGCAGCTCTAG
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--21--5031Chr09:1889289..1889313 (25 bp)
GCAGGGAAGAATCAGCAGCTCTAGC
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--94--3471Chr09:1889290..1889314 (25 bp)
CAGGGAAGAATCAGCAGCTCTAGCG
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--745--1071Chr09:1889291..1889315 (25 bp)
AGGGAAGAATCAGCAGCTCTAGCGG
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--925--8171Chr09:1889293..1889317 (25 bp)
GGAAGAATCAGCAGCTCTAGCGGCG
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--1007--5371Chr09:1889294..1889318 (25 bp)
GAAGAATCAGCAGCTCTAGCGGCGG
LOC_Os09g03740
OsAffx.6163.1.S1_x_at--1025--5871Chr09:1889425..1889449 (25 bp)
GAGCGATGTCTTCGTGGCTGGAGGA
LOC_Os09g03740
Target Sequence 
CACAGCAGCAGATGAGGAGGACGTCGGCGCCGGTGGCGGCGGAAAGTCAGCTCCGGCCGTGGCGGATGGGGCCGAGGTCG
GAACTGGCTGCGGCGGGGAAGAAGCAGCGGCTCCGGCGGCGGGGATGCGACGGCAGTCCACGCGGGGAAGAAGCACCGGC
TCCGGCGGCAGGGAAGAATCAGCAGCTCTAGCGGCGGCAGTCCACGCGGGGAGGATCTCTAGCGAGGATGCGGCGGCACG
GCGGCAGAACATGCGGGGAGGAGGAGGAGCGAGCGAGGAGGAGAAGCGAAGTCTTCGCGTGTGGAGCGATGTCTTCGTGG
CTGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6163.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis