Browse Element(s) Details


Os.52617.1.S1_at

Description gb:AK068333.1
DB_XREF= gi:32978351
TID=Os.52617.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136G09, full insert sequence.
FL= gb:AK068333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0375011/11Ankyrin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03700Os.31312.2.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.31312.5.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.28943.1.S1_x_at1/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03710OsAffx.22492.1.S1_x_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03710OsAffx.22492.1.S1_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03724NANA9+1883879..1884086NA
LOC_Os09g03740OsAffx.6163.1.S1_x_at11/119+1889090..1889491hypothetical protein
LOC_Os09g03740OsAffx.5830.1.S1_x_at1/119+1889090..1889491hypothetical protein
LOC_Os09g03750Os.52617.1.S1_at11/119+1891170..1900087Ankyrin-1, putative, expressed
LOC_Os09g03760OsAffx.29706.1.S1_at11/119+1904065..1904767hypothetical protein
LOC_Os09g03769NANA9+1911605..1912062NA
LOC_Os09g03780NANA9+1916710..1918670expressed protein
LOC_Os09g03790NANA9+1920818..1921186hypothetical protein
LOC_Os09g03800OsAffx.6164.1.S1_at11/119+1924653..1927064hypothetical protein
LOC_Os09g03800OsAffx.31780.1.S1_at1/119+1924653..1927064hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52617.1.S1_at--1072--3091Chr09:1899133..1899157 (25 bp)
AATAGGAGTCTCTGCTGGTTGCGCT
LOC_Os09g03750
Os.52617.1.S1_at--5--5271Chr09:1899200..1899224 (25 bp)
GAATGTTCCGGCCTCATTGGATAAA
LOC_Os09g03750
Os.52617.1.S1_at--269--8071Chr09:1899241..1899265 (25 bp)
GGAGCAGCTTTCATGCTTCTTAAGG
LOC_Os09g03750
Os.52617.1.S1_at--367--7071Chr09:1899365..1899389 (25 bp)
GTAATGCTTGTGATGCCTTTTCAGA
LOC_Os09g03750
Os.52617.1.S1_at--801--9771Chr09:1899699..1899721 (23 bp)
TAAGGGCAGCGCTTCAGGCCGTGAA
LOC_Os09g03750
Os.52617.1.S1_at--566--5331Chr09:1899773..1899797 (25 bp)
GAAGTTGAGCTTCTGCTCTGTTGCT
LOC_Os09g03750
Os.52617.1.S1_at--1038--1211Chr09:1899798..1899822 (25 bp)
AGTTCCAGTACATCTTTTTGCCACG
LOC_Os09g03750
Os.52617.1.S1_at--282--171Chr09:1899889..1899913 (25 bp)
ATTTTTTACGCCTATCCACTTGTAG
LOC_Os09g03750
Os.52617.1.S1_at--549--10491Chr09:1899972..1899996 (25 bp)
TTAAATAGCTCTGCGTGACATGCCC
LOC_Os09g03750
Os.52617.1.S1_at--1068--7531Chr09:1900015..1900039 (25 bp)
GTGGCCGTCCTTGCTGTAAATTGGA
LOC_Os09g03750
Os.52617.1.S1_at--990--7571Chr09:1900061..1900085 (25 bp)
GGGCTCTAACTCACTGATTCTAACT
LOC_Os09g03750
Target Sequence 
AATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCC
TCATTGGATAAAAGCCTGCTATCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTT
CAGATGGCTTGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCGTGAAGAATGAC
CGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGTTGCTAGTTCCAGTAC
ATCTTTTTGCCACGAAAACTCTTGTGCTTTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAAT
ATTTTTTACGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATTGTTCTTCCTGCC
TGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGTGGCCGTCCTTGCTGTAAATTGGACATGCAAAT
CCTGTTTATAAGGGGCTCTAACTCACTGATTCTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis