Browse Element(s) Details


OsAffx.29742.5.S1_s_at

Description tigr:9637.m00478
TID=OsAffx.29742.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0178011/11transposon protein, putative, unclassified
LOC_Os06g1374011/11transposon protein, putative, unclassified
LOC_Os02g1614011/11transposon protein, putative, unclassified
LOC_Os09g0721011/11hypothetical protein
LOC_Os06g139008/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01730NANA9+513691..514140retrotransposon protein, putative, unclassified
LOC_Os09g01740NANA9+517170..517709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01750Os.52238.1.S1_at6/119+521523..524616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01750OsAffx.23366.2.S1_s_at1/119+521523..524616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01760Os.46314.3.S1_at4/119+526739..530038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01760Os.53142.1.S1_at3/119+526739..530038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01770OsAffx.7362.1.S1_x_at1/119+533053..535355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01780OsAffx.29742.5.S1_s_at11/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.2.S1_x_at11/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.1.S1_x_at4/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.3.S1_x_at3/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.4.S1_x_at1/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01790OsAffx.29675.4.S1_x_at11/119+544109..546609hypothetical protein
LOC_Os09g01800Os.40855.2.S1_x_at5/119+551885..554493hypothetical protein
LOC_Os09g01800Os.40855.4.S1_x_at3/119+551885..554493hypothetical protein
LOC_Os09g01800Os.40855.4.S1_at1/119+551885..554493hypothetical protein
LOC_Os09g01800Os.40360.1.S1_x_at1/119+551885..554493hypothetical protein
LOC_Os09g01810NANA9+559258..562200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01820NANA9+562516..565952retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29742.5.S1_s_at--1137--3654Chr09:539249..539273 (25 bp)
CTTTTGACTTTGAAACTATGTATAC
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--634--1495Chr09:539298..539322 (25 bp)
AGCACACAATGTAGCCAATGATGAG
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--1052--1294Chr09:539321..539345 (25 bp)
AGATGCAAGTATTTGAAGCCAATGA
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--816--6874Chr09:539329..539353 (25 bp)
GTATTTGAAGCCAATGATGAGATGC
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--351--5635Chr09:539437..539461 (25 bp)
GACACAATGCATACTAGTGTTGCAA
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--816--4955Chr09:539445..539469 (25 bp)
GCATACTAGTGTTGCAACTGGCGCA
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--964--9895Chr09:539448..539472 (25 bp)
TACTAGTGTTGCAACTGGCGCAACA
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--1075--2195Chr09:539470..539494 (25 bp)
ACAACTGCTACTGCCAACACAATTT
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--301--8715Chr09:539475..539499 (25 bp)
TGCTACTGCCAACACAATTTCAAGT
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--31--3635Chr09:539541..539565 (25 bp)
CTTGACTTTCAACTCAGAGGAGGAA
LOC_Os09g01780
OsAffx.29742.5.S1_s_at--866--4575Chr09:539597..539621 (25 bp)
GCGTTGGATTTTCAATCAAAATCAA
LOC_Os09g01780
Target Sequence 
CTTTTGACTTTGAAACTATGTATACTGCTGATGATGCTGGAAGTTTACGAGCACACAATGTAGCCAATGATGAGATGCAA
GTATTTGCAACCAATGATCAGATGCAAGTATTTGAAGCCAATGATGAGATGCAGGTATTTGCAACCAATGATCAGATGCA
AGTATTTGAAGCCAATGATGAGATGCAACTATTTGAAGAAATGTCAGATCATGCAGACACAATGCATACTAGTGTTGCAA
CTGGCGCAACAACTGCTACTGCCAACACAATTTCAAGTGAACACTCTGGCACAGATGATTCAGAAGCACAGTCAGCGCCA
TCACAGGATTTTTTGTGCAGCACACAAGTGCCATACCTCACCTTGACTTTCAACTCAGAGGAGGAAGCAAGGGCTCACTA
TAACAGGTATGCAAAGTGCGTTGGATTTTCAATCAAAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29742.5.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis