Browse Element(s) Details


OsAffx.29757.3.S1_at

Description tigr:9635.m04205
TID=OsAffx.29757.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative Mutator protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4200011/11hypothetical protein
LOC_Os09g081204/11Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os05g461304/11transposon protein, putative, Mutator sub-class
LOC_Os10g266503/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41930OsAffx.5599.1.S1_at11/117+25116072..25116785C1-like domain containing protein
LOC_Os07g41940NANA7+25118121..25118336hypothetical protein
LOC_Os07g41950NANA7+25119746..25120120hypothetical protein
LOC_Os07g41960NANA7+25124777..25125302hypothetical protein
LOC_Os07g41970Os.7582.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41970OsAffx.24279.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41980OsAffx.5605.1.S1_at11/117+25129482..25130304C1-like domain containing protein
LOC_Os07g41990NANA7+25134701..25135843hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_x_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.1.S1_x_at8/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.4.S1_x_at5/117+25137433..25140270hypothetical protein
LOC_Os07g42010Os.10827.1.S1_x_at8/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42010Os.46055.2.S1_x_at5/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.7.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.1.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.2.S1_x_at6/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.5.S1_x_at1/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42030OsAffx.28867.1.S1_at11/117+25155222..25156295C1-like domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29757.3.S1_at--496--9371Chr07:25138188..25138212 (25 bp)
TCGATGCAATGGGAGAGGATATCAT
LOC_Os07g42000
OsAffx.29757.3.S1_at--1118--8631Chr07:25138179..25138203 (25 bp)
TGGGAGAGGATATCATTGTGCATAT
LOC_Os07g42000
OsAffx.29757.3.S1_at--227--434Chr09:4192500..4192522 (23 bp)
ATCATTGTGCATATCATTTTCAAAC
LOC_Os09g08120
OsAffx.29757.3.S1_at--342--3574Chr09:4192512..4192536 (25 bp)
CATTTTCAAACTTTCTCTTCGGCAT
LOC_Os09g08120
OsAffx.29757.3.S1_at--201--10314Chr09:4192515..4192538 (24 bp)
TTTCAAACTTTCTCTTCGGCATTGC
LOC_Os09g08120
OsAffx.29757.3.S1_at--474--3931Chr07:25138097..25138159 (25 bp)
CGGCATTGCTTACTCAAGTTGGACC
LOC_Os07g42000
OsAffx.29757.3.S1_at--947--3591Chr07:25138094..25138156 (25 bp)
CATTGCTTACTCAAGTTGGACCGTA
LOC_Os07g42000
OsAffx.29757.3.S1_at--252--4891Chr07:25138090..25138152 (25 bp)
GCTTACTCAAGTTGGACCGTAGGAA
LOC_Os07g42000
OsAffx.29757.3.S1_at--377--9731Chr07:25138084..25138104 (21 bp)
TCAAGTTGGACCGTAGGAAGAGCAA
LOC_Os07g42000
OsAffx.29757.3.S1_at--970--8631Chr07:25138013..25138037 (25 bp)
TGGGACAACATAGCAGCTAACGTAG
LOC_Os07g42000
OsAffx.29757.3.S1_at--364--1513Chr09:4192664..4192688 (25 bp)
AGCAGCTAACGTAGTGCCTCACGGA
LOC_Os09g08120
Target Sequence 
TCGATGCAATGGGAGAGGATATCATTGTGCATATCATTTTCAAACTTTCTCTTCGGCATTGCTTACTCAAGTTGGACCGT
AGGAAGAGCAAGAAGATTACGGACTGGCATGCTCATCATCTCCATCTTATTGAGCGGTGGGACAACATAGCAGCTAACGT
AGTGCCTCACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29757.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis