Browse Element(s) Details


OsAffx.29757.4.S1_x_at

Description tigr:9640.m03903
TID=OsAffx.29757.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mutator protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3995011/11hypothetical protein
LOC_Os05g461306/11transposon protein, putative, Mutator sub-class
LOC_Os10g266505/11Transposable element protein, putative, MuDR
LOC_Os07g420005/11hypothetical protein
LOC_Os09g081204/11Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os03g263294/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified
LOC_Os12g39970Os.14325.1.S1_at9/1112+24664170..24667227expressed protein
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29757.4.S1_x_at--531--10774Chr12:24658396..24658420 (25 bp)
TTGAGTGTTGATTTGCTGCACGAAC
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--1027--2571Chr12:24658532..24658556 (25 bp)
AACGACGCGGGTGTTGCCCTTAGCA
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--851--10011Chr12:24658552..24658576 (25 bp)
TAGCACACCTGCTGGGTCAGAGAAT
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--265--1256Chr12:24658579..24658603 (25 bp)
AGTTGGGATACTTCGGAGCGCACTT
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--182--10611Chr12:24658590..24658684 (25 bp)
TTCGGAGCGCACTTCAGAGACTAAA
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--831--3254Chr12:24658686..24658710 (25 bp)
CAACGAAGTCGGATGTTAGCGGCAA
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--362--8236Chr12:24658706..24658730 (25 bp)
GGCAAGACTTGGTTGTAGGTCCACA
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--76--10794Chr12:24658718..24658742 (25 bp)
TTGTAGGTCCACAGACGCAGTCGAC
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--55--2773Chr12:24658751..24658775 (25 bp)
AAGACTAACGCGGACACAGGCCGGA
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--535--5595Chr12:24658899..24658923 (25 bp)
GAAATCGGGTCATCTCAGCTTGCAG
LOC_Os12g39950
OsAffx.29757.4.S1_x_at--886--10171Chr12:24658989..24659013 (25 bp)
TATACACCTTCCACTAGTGGCCGGA
LOC_Os12g39950
Target Sequence 
TTGAGTGTTGATTTGCTGCACGAACATTCAGAGGAGTATGATGACACACATGAGGAGGAGGGATATGAGGCACGTGAGTT
GATGAGGTCCGTGAACGACGCGGGTGTTGCCCTTAGCACACCTGCTGGGTCAGAGAATGAAGTTGGGATACTTCGGAGCG
CACTTCAGAGACTAAAACAACGAAGTCGGATGTTAGCGGCAAGACTTGGTTGTAGGTCCACAGACGCAGTCGACCCACAA
CCAAGACTAACGCGGACACAGGCCGGAGAAACAAGTCAACAAAGAGCTGAAGAGGAAGGGGAGGAAGAACATGATGAAGG
GGAGGAAGAACATGAGGAAGGGGAAGAAGGAGATGGACAGAGTGACGAAGAGGAAGAGGAACAACCCGAAGAAATCGGGT
CATCTCAGCTTGCAGGTGCCCCGCAGCCATCGCAGCCTTCCCAGTGTCGCCCCCAGAGAAAGAGGGCACCGGTGGACCGG
TATACACCTTCCACTAGTGGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29757.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis