Browse Element(s) Details


OsAffx.29759.1.S1_at

Description tigr:9637.m00585
TID=OsAffx.29759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0815011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein
LOC_Os09g08170OsAffx.22927.1.S1_x_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08170OsAffx.22894.1.S1_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08180OsAffx.20729.1.S1_x_at4/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.3.S1_x_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_x_at2/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_x_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08190OsAffx.17601.1.S1_s_at11/119+4249758..4250916Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29759.1.S1_at--594--8231Chr09:4225351..4225375 (25 bp)
GGCAACTGGCCTGGTCAAGACAGCT
LOC_Os09g08150
OsAffx.29759.1.S1_at--1028--8451Chr09:4225345..4225369 (25 bp)
TGGCCTGGTCAAGACAGCTGTCTCA
LOC_Os09g08150
OsAffx.29759.1.S1_at--1112--9711Chr09:4225337..4225361 (25 bp)
TCAAGACAGCTGTCTCACGGCAGCG
LOC_Os09g08150
OsAffx.29759.1.S1_at--656--291Chr09:4225167..4225320 (25 bp)
ATAGCAAGAGGCTGAACGGCTCCAG
LOC_Os09g08150
OsAffx.29759.1.S1_at--808--7431Chr09:4225081..4225105 (25 bp)
GTGTACGTGGCGGTGCATGCACTGC
LOC_Os09g08150
OsAffx.29759.1.S1_at--827--3771Chr09:4225060..4225084 (25 bp)
CTGCGCGTCGGAGAAAACGTCGTAG
LOC_Os09g08150
OsAffx.29759.1.S1_at--1020--2371Chr09:4225046..4225070 (25 bp)
AAACGTCGTAGCTGCTGACGGGTCC
LOC_Os09g08150
OsAffx.29759.1.S1_at--296--9391Chr09:4225041..4225065 (25 bp)
TCGTAGCTGCTGACGGGTCCCCTGG
LOC_Os09g08150
OsAffx.29759.1.S1_at--570--2771Chr09:4225011..4225035 (25 bp)
AAGACCCTCTGCAACGCGTGTGGCT
LOC_Os09g08150
OsAffx.29759.1.S1_at--486--1831Chr09:4224998..4225022 (25 bp)
ACGCGTGTGGCTTGAGGTTCATGTC
LOC_Os09g08150
OsAffx.29759.1.S1_at--336--10771Chr09:4224987..4225011 (25 bp)
TTGAGGTTCATGTCTGGGCGGCTGA
LOC_Os09g08150
Target Sequence 
GGCAACTGGCCTGGTCAAGACAGCTGTCTCACGGCAGCGCCTGGGCGCGGCGCGCATAGCAAGAGGCTGAACGGCTCCAG
CGGCAGCCGCGGCAAGAAGAGCCCCGGCCCCGCGGGGGTGAAGGTGGGCATGGAGGCCGGCGTGTACGTGGCGGTGCATG
CACTGCGCGTCGGAGAAAACGTCGTAGCTGCTGACGGGTCCCCTGGGTCCCAAGACCCTCTGCAACGCGTGTGGCTTGAG
GTTCATGTCTGGGCGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis