Browse Element(s) Details


OsAffx.29765.1.S1_at

Description tigr:9637.m00623
TID=OsAffx.29765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0852011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08470Os.51634.1.S1_at2/119+4419207..4425072retrotransposon protein, putative, unclassified, expressed
LOC_Os09g08480OsAffx.6208.1.S1_at11/119+4425809..4427345expressed protein
LOC_Os09g08490OsAffx.29764.1.S1_x_at11/119+4428270..4428673nodulin MtN3 protein, putative
LOC_Os09g08490OsAffx.6203.1.S1_x_at1/119+4428270..4428673nodulin MtN3 protein, putative
LOC_Os09g08500OsAffx.20858.1.S1_x_at10/119+4435298..4437641hypothetical protein
LOC_Os09g08500OsAffx.20858.4.S1_x_at7/119+4435298..4437641hypothetical protein
LOC_Os09g08510Os.11575.4.S1_x_at11/119+4438508..4440409transposon protein, putative, Pong sub-class
LOC_Os09g08510Os.11575.2.S1_a_at11/119+4438508..4440409transposon protein, putative, Pong sub-class
LOC_Os09g08510Os.11575.3.S1_x_at8/119+4438508..4440409transposon protein, putative, Pong sub-class
LOC_Os09g08520OsAffx.29765.1.S1_at11/119+4442720..4443847hypothetical protein
LOC_Os09g08530NANA9+4449944..4450905hypothetical protein
LOC_Os09g08540NANA9+4453469..4459072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08550NANA9+4461359..4463095F-box domain containing protein
LOC_Os09g08560OsAffx.6209.1.S1_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.6209.1.S1_x_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.12971.1.S1_x_at1/119+4465499..4465945hypothetical protein
LOC_Os09g08570NANA9+4466902..4467663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29765.1.S1_at--335--9171Chr09:4443117..4443141 (25 bp)
TGCCGGCCATGATGTTCGACGGCAC
LOC_Os09g08520
OsAffx.29765.1.S1_at--614--7211Chr09:4443092..4443116 (25 bp)
GTCGAACACGCACAAGTGCCGCATC
LOC_Os09g08520
OsAffx.29765.1.S1_at--386--7311Chr09:4442935..4442959 (25 bp)
GTGCTCGACGGTGTGCCATGGATTC
LOC_Os09g08520
OsAffx.29765.1.S1_at--69--7291Chr09:4442923..4442947 (25 bp)
GTGCCATGGATTCCCAAGAACAGCT
LOC_Os09g08520
OsAffx.29765.1.S1_at--409--2051Chr09:4442889..4442913 (25 bp)
ACTTCAATCTGTGGCTGCGTGACAT
LOC_Os09g08520
OsAffx.29765.1.S1_at--851--3911Chr09:4442858..4442882 (25 bp)
CGGCCGCACCGGGAAGGTGTTCATT
LOC_Os09g08520
OsAffx.29765.1.S1_at--474--7411Chr09:4442842..4442866 (25 bp)
GTGTTCATTGGCACCTTAGGCTATG
LOC_Os09g08520
OsAffx.29765.1.S1_at--792--10091Chr09:4442826..4442850 (25 bp)
TAGGCTATGGCATCTTCTCTTACGA
LOC_Os09g08520
OsAffx.29765.1.S1_at--405--1871Chr09:4442805..4442829 (25 bp)
ACGACCTCAACACCGGCAAGCTGGA
LOC_Os09g08520
OsAffx.29765.1.S1_at--341--5171Chr09:4442790..4442814 (25 bp)
GCAAGCTGGAGAACCTGGCAACTGA
LOC_Os09g08520
OsAffx.29765.1.S1_at--358--991Chr09:4442766..4442790 (25 bp)
AGGATGAAATGCAGTACGGCCACCC
LOC_Os09g08520
Target Sequence 
TGCCGGCCATGATGTTCGACGGCACGTCGAACACGCACAAGTGCCGCATCGGCGAGATGCCGGAGGACGGGCGGCTCTGC
GTCGGCTCGGTGGAGAGGCAGGAGCTGCTGCTGTGCGTGCGGGGGAGCGGCGACGGCAGCGACAACGGGTGGGTGGTGGA
GAGGCGCGTGCGCATACGGGAGGTGCTCGACGGTGTGCCATGGATTCCCAAGAACAGCTTCCTCCGCCACTTCAATCTGT
GGCTGCGTGACATCGACGCCGGCCGCACCGGGAAGGTGTTCATTGGCACCTTAGGCTATGGCATCTTCTCTTACGACCTC
AACACCGGCAAGCTGGAGAACCTGGCAACTGAGGATGAAATGCAGTACGGCCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis