Browse Element(s) Details


OsAffx.6209.1.S1_x_at

Description tigr:9637.m00627
TID=OsAffx.6209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0856011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08520OsAffx.29765.1.S1_at11/119+4442720..4443847hypothetical protein
LOC_Os09g08530NANA9+4449944..4450905hypothetical protein
LOC_Os09g08540NANA9+4453469..4459072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08550NANA9+4461359..4463095F-box domain containing protein
LOC_Os09g08560OsAffx.6209.1.S1_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.6209.1.S1_x_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.12971.1.S1_x_at1/119+4465499..4465945hypothetical protein
LOC_Os09g08570NANA9+4466902..4467663hypothetical protein
LOC_Os09g08580OsAffx.6210.1.S1_at11/119+4473924..4475106expressed protein
LOC_Os09g08590NANA9+4477192..4480656transposon protein, putative, Mutator sub-class
LOC_Os09g08600OsAffx.29766.1.S1_x_at11/119+4481037..4481798GRF zinc finger family protein
LOC_Os09g08610OsAffx.29767.1.S1_at11/119+4487402..4488259hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6209.1.S1_x_at--27--8891Chr09:4465530..4465554 (25 bp)
TGAGGACGGGCATCCAGCAAGCCGC
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--969--8111Chr09:4465533..4465557 (25 bp)
GGACGGGCATCCAGCAAGCCGCGAT
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--843--7591Chr09:4465537..4465561 (25 bp)
GGGCATCCAGCAAGCCGCGATGCAT
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--665--4351Chr09:4465543..4465708 (25 bp)
CCAGCAAGCCGCGATGCATGAGTTT
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--262--1491Chr09:4465545..4465710 (25 bp)
AGCAAGCCGCGATGCATGAGTTTGT
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--434--2671Chr09:4465548..4465713 (25 bp)
AAGCCGCGATGCATGAGTTTGTGAG
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--1031--633Chr12:6116294..6116458 (25 bp)
ATGCATGAGTTTGTGAGCCAAGTCA
NONE
OsAffx.6209.1.S1_x_at--114--711Chr09:4465703..4465725 (23 bp)
ATGAGTTTGTGAGCCAAGTCACCGA
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--19--6191Chr09:4465757..4465781 (25 bp)
GAGGAGCCAATCAATGTGTCCCCGG
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--242--7451Chr09:4465772..4465796 (25 bp)
GTGTCCCCGGACGAAATAATCCATG
LOC_Os09g08560
OsAffx.6209.1.S1_x_at--199--3171Chr09:4465887..4465911 (25 bp)
AATTGAAGGTGATGGCGATCTCTCC
LOC_Os09g08560
Target Sequence 
TGAGGACGGGCATCCAGCAAGCCGCGATGCATGAGTTTGTGAGCCAAGTCACCGATTGGGGCTGTCAAAGGACAGCGAGA
AGATGGGAGGAGCCAATCAATGTGTCCCCGGACGAAATAATCCATGGGAAGGGTATGAACACGAAGAACGCCAGGAAAAT
GTCGATCGACAAGGACGATGGAGAGGCCAAGATGACGATGGCGGCGGCGGCGGCGGAATTGAAGGTGATGGCGATCTCTC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6209.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis