Browse Element(s) Details


OsAffx.6210.1.S1_at

Description tigr:9637.m00629
TID=OsAffx.6210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0858011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08530NANA9+4449944..4450905hypothetical protein
LOC_Os09g08540NANA9+4453469..4459072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08550NANA9+4461359..4463095F-box domain containing protein
LOC_Os09g08560OsAffx.6209.1.S1_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.6209.1.S1_x_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.12971.1.S1_x_at1/119+4465499..4465945hypothetical protein
LOC_Os09g08570NANA9+4466902..4467663hypothetical protein
LOC_Os09g08580OsAffx.6210.1.S1_at11/119+4473924..4475106expressed protein
LOC_Os09g08590NANA9+4477192..4480656transposon protein, putative, Mutator sub-class
LOC_Os09g08600OsAffx.29766.1.S1_x_at11/119+4481037..4481798GRF zinc finger family protein
LOC_Os09g08610OsAffx.29767.1.S1_at11/119+4487402..4488259hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6210.1.S1_at--443--1231Chr09:4474565..4474589 (25 bp)
AGTTCGACCCCGACTTGCTGGAGTG
LOC_Os09g08580
OsAffx.6210.1.S1_at--420--8511Chr09:4474621..4474645 (25 bp)
TGGCACATCCGCAACAACTCCTGGA
LOC_Os09g08580
OsAffx.6210.1.S1_at--401--2211Chr09:4474634..4474658 (25 bp)
ACAACTCCTGGACGCTCGCGCTGGA
LOC_Os09g08580
OsAffx.6210.1.S1_at--62--9371Chr09:4474880..4474904 (25 bp)
TCGACGCGGTTCCATGGCTGCCAAG
LOC_Os09g08580
OsAffx.6210.1.S1_at--1133--8471Chr09:4474894..4474918 (25 bp)
TGGCTGCCAAGAAACGTCCTGCTCC
LOC_Os09g08580
OsAffx.6210.1.S1_at--940--8591Chr09:4474925..4474949 (25 bp)
TGGTCCTCTGGCTGAGCGACATCGA
LOC_Os09g08580
OsAffx.6210.1.S1_at--75--9612Chr09:4474973..4474997 (25 bp)
TCATCGCCACCGCTGGATTCGGGCG
LOC_Os09g08580
OsAffx.6210.1.S1_at--1113--8551Chr09:4474986..4475010 (25 bp)
TGGATTCGGGCGCTTCTCGTACCAT
LOC_Os09g08580
OsAffx.6210.1.S1_at--512--9391Chr09:4475002..4475026 (25 bp)
TCGTACCATCTGGACACCGGCGAGA
LOC_Os09g08580
OsAffx.6210.1.S1_at--866--6111Chr09:4475029..4475053 (25 bp)
GAGTGCTTGGCAACAGAAGACGGCA
LOC_Os09g08580
OsAffx.6210.1.S1_at--62--2771Chr09:4475045..4475069 (25 bp)
AAGACGGCATGGAGTACGGCCAACC
LOC_Os09g08580
Target Sequence 
AGTTCGACCCCGACTTGCTGGAGTGCCTCACCGTGCGCGCCGCGGGGAGCCTGTACTGGCACATCCGCAACAACTCCTGG
ACGCTCGCGCTGGACACCGCCACGCTGCAGTTCTCCTTCCTGCGGGCGCCGGCGGCGATGTGGGACTCGACCTCCCACCA
CAGGTACCGCGTCGGGGAGATGCCGGCGTCGGACGGGCGGCTGTGCGTCGCCTCGCTGGAGCCGCCGGGGCTGCTGGAGC
TCTGGGTGCGGGGGAGCGGCGAATGCAGCGACCACGGGTGGGTGATGGAGAGGCGCGTGCGCATGCTGGAGGTGCTCGAC
GCGGTTCCATGGCTGCCAAGAAACGTCCTGCTCCGGCACTTGGTCCTCTGGCTGAGCGACATCGACGCTGGCCGCACCGG
CAAGGTGTTCATCGCCACCGCTGGATTCGGGCGCTTCTCGTACCATCTGGACACCGGCGAGATGGAGTGCTTGGCAACAG
AAGACGGCATGGAGTACGGCCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis