Browse Element(s) Details


OsAffx.29767.1.S1_at

Description tigr:9637.m00632
TID=OsAffx.29767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0861011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08550NANA9+4461359..4463095F-box domain containing protein
LOC_Os09g08560OsAffx.6209.1.S1_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.6209.1.S1_x_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.12971.1.S1_x_at1/119+4465499..4465945hypothetical protein
LOC_Os09g08570NANA9+4466902..4467663hypothetical protein
LOC_Os09g08580OsAffx.6210.1.S1_at11/119+4473924..4475106expressed protein
LOC_Os09g08590NANA9+4477192..4480656transposon protein, putative, Mutator sub-class
LOC_Os09g08600OsAffx.29766.1.S1_x_at11/119+4481037..4481798GRF zinc finger family protein
LOC_Os09g08610OsAffx.29767.1.S1_at11/119+4487402..4488259hypothetical protein
LOC_Os09g08620Os.50523.1.S1_at10/119+4501977..4505802F-box domain containing protein, expressed
LOC_Os09g08630Os.31312.2.S1_x_at4/119+4512274..4515617retrotransposon protein, putative, unclassified
LOC_Os09g08630Os.31312.5.S1_x_at4/119+4512274..4515617retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29767.1.S1_at--26--5751Chr09:4487941..4487965 (25 bp)
GACGGCCACGCTAGCGGTTGTCCGA
LOC_Os09g08610
OsAffx.29767.1.S1_at--1048--9991Chr09:4487952..4487976 (25 bp)
TAGCGGTTGTCCGACAGCGCGTCGC
LOC_Os09g08610
OsAffx.29767.1.S1_at--609--9411Chr09:4487997..4488021 (25 bp)
TCGTGGCGACGGGAGCCAGGGTCAA
LOC_Os09g08610
OsAffx.29767.1.S1_at--875--611Chr09:4488058..4488082 (25 bp)
ATGCTGGGAGGAGCAACACGAGACC
LOC_Os09g08610
OsAffx.29767.1.S1_at--450--3271Chr09:4488071..4488095 (25 bp)
CAACACGAGACCGAGGTGGACGTCG
LOC_Os09g08610
OsAffx.29767.1.S1_at--13--1911Chr09:4488090..4488114 (25 bp)
ACGTCGTACATGGTGAAGCCGGAGA
LOC_Os09g08610
OsAffx.29767.1.S1_at--436--8991Chr09:4488103..4488127 (25 bp)
TGAAGCCGGAGATGCCGCCTTAGCC
LOC_Os09g08610
OsAffx.29767.1.S1_at--368--8051Chr09:4488110..4488134 (25 bp)
GGAGATGCCGCCTTAGCCGTCAAGG
LOC_Os09g08610
OsAffx.29767.1.S1_at--703--6351Chr09:4488113..4488137 (25 bp)
GATGCCGCCTTAGCCGTCAAGGGAG
LOC_Os09g08610
OsAffx.29767.1.S1_at--595--4211Chr09:4488117..4488141 (25 bp)
CCGCCTTAGCCGTCAAGGGAGAGGC
LOC_Os09g08610
OsAffx.29767.1.S1_at--791--7331Chr09:4488195..4488219 (25 bp)
GGAGGGTGACCCTGGACGCCACTAG
LOC_Os09g08610
Target Sequence 
GACGGCCACGCTAGCGGTTGTCCGACAGCGCGTCGCACGGGGGTTGCGGGAGCAGCTCGTGGCGACGGGAGCCAGGGTCA
AGGACAAGGATGCGGGGGAGGATCCTGGAGGAGAGCGATGCTGGGAGGAGCAACACGAGACCGAGGTGGACGTCGTACAT
GGTGAAGCCGGAGATGCCGCCTTAGCCGTCAAGGGAGAGGCGCGGGGAGGAGGCGGCGGCATCTACAGGGGCAAAGGCGG
CGGGGTGGAGGTCTGGAGGGTGACCCTGGACGCCACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis