Browse Element(s) Details


Os.50523.1.S1_at

Description gb:AK121607.1
DB_XREF= gi:37991230
TID=Os.50523.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042G23, full insert sequence.
FL= gb:AK121607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0862010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08590NANA9+4477192..4480656transposon protein, putative, Mutator sub-class
LOC_Os09g08600OsAffx.29766.1.S1_x_at11/119+4481037..4481798GRF zinc finger family protein
LOC_Os09g08610OsAffx.29767.1.S1_at11/119+4487402..4488259hypothetical protein
LOC_Os09g08620Os.50523.1.S1_at10/119+4501977..4505802F-box domain containing protein, expressed
LOC_Os09g08630Os.31312.2.S1_x_at4/119+4512274..4515617retrotransposon protein, putative, unclassified
LOC_Os09g08630Os.31312.5.S1_x_at4/119+4512274..4515617retrotransposon protein, putative, unclassified
LOC_Os09g08640OsAffx.22492.1.S1_at1/119+4516251..4522405retrotransposon protein, putative, unclassified
LOC_Os09g08640OsAffx.22492.1.S1_x_at1/119+4516251..4522405retrotransposon protein, putative, unclassified
LOC_Os09g08650NANA9+4525474..4531479retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50523.1.S1_at--1152--5611Chr09:4504817..4504841 (25 bp)
GACAACGGCTGGTTCCTGCAGAAGA
LOC_Os09g08620
Os.50523.1.S1_at--403--4351Chr09:4504750..4504774 (25 bp)
CCAGGGACAAGTTGAGCCGGACCGT
LOC_Os09g08620
Os.50523.1.S1_at--948--7551Chr09:4504698..4504722 (25 bp)
GGGCCGCACAGGGAAGCTATTCTTC
LOC_Os09g08620
Os.50523.1.S1_at--235--4851Chr09:4504654..4504678 (25 bp)
GCTACTCCTTCCATATGGACACAGG
LOC_Os09g08620
Os.50523.1.S1_at--991--1611Chr09:4504627..4504651 (25 bp)
AGCTGGAGCGCTTGGCCACTGAAGA
LOC_Os09g08620
Os.50523.1.S1_at--876--2911NONE
AAGGAGTATGGCTACCCCATCTATG
NONE
Os.50523.1.S1_at--768--4431Chr09:4504550..4504574 (25 bp)
GCCTTCCTAGCTCCAGAAAAATCTG
LOC_Os09g08620
Os.50523.1.S1_at--1119--7731Chr09:4502225..4502249 (25 bp)
GGTGGTGACCACTGAGACTACGTTA
LOC_Os09g08620
Os.50523.1.S1_at--182--1411Chr09:4502211..4502235 (25 bp)
AGACTACGTTATCATCCAGCTCACT
LOC_Os09g08620
Os.50523.1.S1_at--251--6451Chr09:4502172..4502196 (25 bp)
GATCACCAAAATTCCATGCCTCGTT
LOC_Os09g08620
Os.50523.1.S1_at--564--451Chr09:4502084..4502108 (25 bp)
ATCTAATTCCTATCAGTTCTGTTGC
LOC_Os09g08620
Target Sequence 
GACAACGGCTGGTTCCTGCAGAAGAGGATGAACATGCGCAAGGTGTTCGACACCGTGCCCGGGCTGCCCAGGGACAAGTT
GAGCCGGACCGTGTCCATCTGGCTCAGCGACATCGACGCGGGCCGCACAGGGAAGCTATTCTTCGAAACAGAGGGGTATG
GGCGCTACTCCTTCCATATGGACACAGGCAAGCTGGAGCGCTTGGCCACTGAAGATGGAAAGGAGTATGGCTACCCCATC
TATGCCTACTTCATGGCCTGGCCTCCTGCCTTCCTAGCTCCAGAAAAATCTGAATTTCCGGGTGGTGACCACTGAGACTA
CGTTATCATCCAGCTCACTCCCTTCCATTTCTGGATCACCAAAATTCCATGCCTCGTTCACTCATCAATCTACTGAGCAT
AGTGGGAAGTTATGAGTAGTTTTGTTGTTCTGCATGAGACTATCTAATTCCTATCAGTTCTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis