Browse Element(s) Details


OsAffx.2980.1.S1_at

Description tigr:9630.m04525
TID=OsAffx.2980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4655011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein
LOC_Os02g46540NANA2+28376885..28377103hypothetical protein
LOC_Os02g46550OsAffx.2980.1.S1_at11/112+28382185..28382508hypothetical protein
LOC_Os02g46560Os.51109.1.S1_at11/112+28384301..28387379Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g46570Os.27691.1.S1_x_at2/112+28391863..28393311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46570Os.27691.2.S1_x_at2/112+28391863..28393311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46580Os.27691.1.S1_x_at2/112+28395516..28400717retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2980.1.S1_at--697--8231Chr02:28382233..28382257 (25 bp)
GGCAACCACCACCATGGGACTACTT
LOC_Os02g46550
OsAffx.2980.1.S1_at--831--1691Chr02:28382240..28382264 (25 bp)
ACCACCATGGGACTACTTCGGAGCT
LOC_Os02g46550
OsAffx.2980.1.S1_at--976--3491Chr02:28382245..28382269 (25 bp)
CATGGGACTACTTCGGAGCTCCGAG
LOC_Os02g46550
OsAffx.2980.1.S1_at--1162--8071Chr02:28382259..28382283 (25 bp)
GGAGCTCCGAGCTGCCTCTAGGAGA
LOC_Os02g46550
OsAffx.2980.1.S1_at--961--9151Chr02:28382271..28382295 (25 bp)
TGCCTCTAGGAGAGCGTCATCGCTA
LOC_Os02g46550
OsAffx.2980.1.S1_at--477--5891Chr02:28382282..28382306 (25 bp)
GAGCGTCATCGCTATGGGAAGAGAT
LOC_Os02g46550
OsAffx.2980.1.S1_at--614--1351Chr02:28382301..28382325 (25 bp)
AGAGATGGTGCTGCCATATAATTTC
LOC_Os02g46550
OsAffx.2980.1.S1_at--19--3731Chr02:28382343..28382367 (25 bp)
CTACTTCCCATCTAGCTCATCATGT
LOC_Os02g46550
OsAffx.2980.1.S1_at--566--451Chr02:28382352..28382376 (25 bp)
ATCTAGCTCATCATGTCAGCACCAC
LOC_Os02g46550
OsAffx.2980.1.S1_at--577--1491Chr02:28382369..28382393 (25 bp)
AGCACCACCTTGCAGTCATGGGAGT
LOC_Os02g46550
OsAffx.2980.1.S1_at--1026--1711Chr02:28382372..28382396 (25 bp)
ACCACCTTGCAGTCATGGGAGTGGA
LOC_Os02g46550
Target Sequence 
GGCAACCACCACCATGGGACTACTTCGGAGCTCCGAGCTGCCTCTAGGAGAGCGTCATCGCTATGGGAAGAGATGGTGCT
GCCATATAATTTCCCTCCTCTCTCACCATCCTACTTCCCATCTAGCTCATCATGTCAGCACCACCTTGCAGTCATGGGAG
TGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis