Browse Element(s) Details


OsAffx.29800.1.S1_at

Description tigr:9637.m00841
TID=OsAffx.29800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11100NANA9+6153314..6159137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11110OsAffx.20354.1.S1_at2/119+6159766..6162707retrotransposon protein, putative, unclassified
LOC_Os09g11120NANA9+6164470..6165262hypothetical protein
LOC_Os09g11130OsAffx.29799.1.S1_x_at9/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.1.S1_at7/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.2.S1_at2/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.2.S1_x_at1/119+6166523..6167856hypothetical protein
LOC_Os09g11140OsAffx.25834.1.S1_at1/119+6170119..6173633hypothetical protein
LOC_Os09g11150OsAffx.11392.5.S1_at11/119+6175333..6178600hypothetical protein
LOC_Os09g11150OsAffx.11392.2.S1_x_at3/119+6175333..6178600hypothetical protein
LOC_Os09g11160OsAffx.29800.1.S1_at11/119+6183856..6185368expressed protein
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein
LOC_Os09g11190OsAffx.17640.1.S1_at11/119+6204643..6206169hypothetical protein
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29800.1.S1_at--167--7351Chr09:6185232..6185253 (22 bp)
GTGACCCCGCGCACTGCAGGTTGGA
LOC_Os09g11160
OsAffx.29800.1.S1_at--785--5771Chr09:6184799..6184823 (25 bp)
GACGAAGGGCGTCTTCGTCCCTCGC
LOC_Os09g11160
OsAffx.29800.1.S1_at--936--5251Chr09:6184751..6184775 (25 bp)
GAATCCCAATCCCTCTTAGAATCGG
LOC_Os09g11160
OsAffx.29800.1.S1_at--959--9311Chr09:6184742..6184766 (25 bp)
TCCCTCTTAGAATCGGATACAAAGG
LOC_Os09g11160
OsAffx.29800.1.S1_at--500--9831Chr09:6184725..6184749 (25 bp)
TACAAAGGAAACAATGCCCAAAATT
LOC_Os09g11160
OsAffx.29800.1.S1_at--782--3051Chr09:6184714..6184738 (25 bp)
CAATGCCCAAAATTGGTACAACCAA
LOC_Os09g11160
OsAffx.29800.1.S1_at--697--7831Chr09:6184700..6184724 (25 bp)
GGTACAACCAAATCACTCAATAACA
LOC_Os09g11160
OsAffx.29800.1.S1_at--851--5372Chr04:9310013..9310036 (24 bp)
GAAGAACTACAATATGCATCACAAC
NONE
OsAffx.29800.1.S1_at--1102--10111Chr09:6184649..6184673 (25 bp)
TATGCATCACAACTACAAAACTACA
LOC_Os09g11160
OsAffx.29800.1.S1_at--788--2074Chr03:9022111..9022135 (25 bp)
ACATCACAAAATTTCACTCGCCTGC
NONE
OsAffx.29800.1.S1_at--682--1771Chr09:6184515..6184539 (25 bp)
ACCGGAGGGAGCCTTCGCCGCTGGA
LOC_Os09g11160
Target Sequence 
GTGACCCCGCGCACTGCAGGTTGGACGAAGGGCGTCTTCGTCCCTCGCGGGCGCCTTCGCCCTCAACCCCCGAATCCCAA
TCCCTCTTAGAATCGGATACAAAGGAAACAATGCCCAAAATTGGTACAACCAAATCACTCAATAACAAAATAAACGTCCA
AGAAGAACTACAATATGCATCACAACTACAAAACTACATCACAAAATTTCACTCGCCTGCGCCGGATCCGACCTCGGCCG
TCGCCACCACCGCCCTCAGCCGTCGCCACGCTATCCATCTGCAGCCGCCGCCGCCGCTGCCACCGCCACCGGAGGGAGCC
TTCGCCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis