Browse Element(s) Details


OsAffx.29802.1.S1_at

Description tigr:9637.m00851
TID=OsAffx.29802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1126010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11230Os.17604.1.S1_at11/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_s_at10/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_at2/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11240Os.7219.1.S1_at11/119+6242180..6244884expressed protein
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os09g11300OsAffx.6233.1.S1_at8/119+6270930..6273949hypothetical protein
LOC_Os09g11300OsAffx.30202.1.S1_x_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11300Os.51754.1.S1_at1/119+6270930..6273949hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29802.1.S1_at--784--1471Chr09:6249876..6249900 (25 bp)
AGAATAGCCAGCAAAAACGCAGGAT
LOC_Os09g11260
OsAffx.29802.1.S1_at--1130--2591Chr09:6249891..6249915 (25 bp)
AACGCAGGATGCCACCATTGTACAC
LOC_Os09g11260
OsAffx.29802.1.S1_at--558--5931Chr09:6249946..6249970 (25 bp)
GAGCATCAGAGAGCGTGTCAATTTC
LOC_Os09g11260
OsAffx.29802.1.S1_at--1085--4651Chr09:6249958..6249982 (25 bp)
GCGTGTCAATTTCAGGATCGCAATT
LOC_Os09g11260
OsAffx.29802.1.S1_at--1103--5331NONE
GAAGATTTGGTCAGGACTGGCCTAG
NONE
OsAffx.29802.1.S1_at--562--7111Chr09:6250242..6250266 (25 bp)
GTCAGGACTGGCCTAGAGTTGCACA
LOC_Os09g11260
OsAffx.29802.1.S1_at--1023--6051Chr09:6250257..6250281 (25 bp)
GAGTTGCACAGTTTATCAGCACAAA
LOC_Os09g11260
OsAffx.29802.1.S1_at--987--2251Chr09:6250280..6250409 (25 bp)
AAATCTACTGGTCAAATCTGTGTCT
LOC_Os09g11260
OsAffx.29802.1.S1_at--243--491Chr09:6250400..6250424 (25 bp)
ATCTGTGTCTATGCCGAGGAATATT
LOC_Os09g11260
OsAffx.29802.1.S1_at--951--8211Chr09:6250417..6250441 (25 bp)
GGAATATTTCCTGAAGCGTCACACA
LOC_Os09g11260
OsAffx.29802.1.S1_at--495--4651Chr09:6250432..6250456 (25 bp)
GCGTCACACACATAGCCCAGTGAAG
LOC_Os09g11260
Target Sequence 
AGAATAGCCAGCAAAAACGCAGGATGCCACCATTGTACACCGCCGCTGCACGGCCTCCTCAAGAAGGCTGGAGCATCAGA
GAGCGTGTCAATTTCAGGATCGCAATTGGAAGATTTGGTCAGGACTGGCCTAGAGTTGCACAGTTTATCAGCACAAAATC
TACTGGTCAAATCTGTGTCTATGCCGAGGAATATTTCCTGAAGCGTCACACACATAGCCCAGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis