Browse Element(s) Details


OsAffx.29817.1.S1_at

Description tigr:9637.m00966
TID=OsAffx.29817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1244011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12410OsAffx.29816.2.S1_at11/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12410OsAffx.29816.1.S1_at1/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12420OsAffx.6251.1.S1_at11/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.18.S1_x_at10/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.3.S1_x_at8/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_at5/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_x_at3/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12430OsAffx.17663.1.S1_at11/119+7115096..7116458hypothetical protein
LOC_Os09g12440OsAffx.29817.1.S1_at11/119+7118890..7119611hypothetical protein
LOC_Os09g12450NANA9+7122716..7123150hypothetical protein
LOC_Os09g12460OsAffx.17665.1.S1_at11/119+7126341..7127357hypothetical protein
LOC_Os09g12470OsAffx.6252.1.S1_at10/119+7128773..7129316hypothetical protein
LOC_Os09g12480OsAffx.17666.1.S1_at9/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.2.S1_a_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.1.S1_x_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.27541.1.A1_at1/119+7132650..7144978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29817.1.S1_at--1093--1851Chr09:7119557..7119581 (25 bp)
ACAGACCCCGACGTGGAAAATGATC
LOC_Os09g12440
OsAffx.29817.1.S1_at--1090--2611Chr09:7119522..7119546 (25 bp)
AACCTATGTCAACCTCAAGGATTGG
LOC_Os09g12440
OsAffx.29817.1.S1_at--246--1011Chr09:7119505..7119529 (25 bp)
AGGATTGGGTGTTCACTCAAACGCG
LOC_Os09g12440
OsAffx.29817.1.S1_at--833--5911Chr09:7119481..7119505 (25 bp)
GAGCATACGACCCAGACCAGCTCAT
LOC_Os09g12440
OsAffx.29817.1.S1_at--1014--7951Chr09:7119413..7119437 (25 bp)
GGATCAGAAGTTCTTATGCCTGTAG
LOC_Os09g12440
OsAffx.29817.1.S1_at--711--3871Chr09:7119394..7119418 (25 bp)
CTGTAGATGAGCAAGGCCCATGTTT
LOC_Os09g12440
OsAffx.29817.1.S1_at--72--2951Chr09:7119382..7119406 (25 bp)
AAGGCCCATGTTTTCTTAGCATACA
LOC_Os09g12440
OsAffx.29817.1.S1_at--1052--331Chr09:7119362..7119386 (25 bp)
ATACAATTTCTTTACACCTTGCGAG
LOC_Os09g12440
OsAffx.29817.1.S1_at--1081--10471Chr09:7119351..7119375 (25 bp)
TTACACCTTGCGAGATGCGGGCAAT
LOC_Os09g12440
OsAffx.29817.1.S1_at--635--10091Chr09:7118966..7118990 (25 bp)
TAGGACCAGTTGAATGCACATGCTT
LOC_Os09g12440
OsAffx.29817.1.S1_at--944--4891Chr09:7118945..7118969 (25 bp)
GCTTAATTACTCTTATAACCGTGAA
LOC_Os09g12440
Target Sequence 
ACAGACCCCGACGTGGAAAATGATCATGAGAAGCAAACCTATGTCAACCTCAAGGATTGGGTGTTCACTCAAACGCGAGC
ATACGACCCAGACCAGCTCATCAAAACTGGTATGGATGTTGATTTCAATGTATGGCAAGCTATAGGATCAGAAGTTCTTA
TGCCTGTAGATGAGCAAGGCCCATGTTTTCTTAGCATACAATTTCTTTACACCTTGCGAGATGCGGGCAATGGAAACATT
AAGATGATAGGACCAGTTGAATGCACATGCTTAATTACTCTTATAACCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis