Browse Element(s) Details


OsAffx.29856.1.S1_at

Description tigr:9637.m01289
TID=OsAffx.29856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1557011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15600OsAffx.13016.2.S1_at10/119+9525904..9527944transposon protein, putative, unclassified
LOC_Os09g15610Os.14491.2.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610Os.47463.1.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15620NANA9+9532863..9534256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15630Os.27037.1.A1_at1/119+9535282..9538504transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29856.1.S1_at--905--4271Chr09:9510851..9510875 (25 bp)
CCTGCTGGATCTTCTTCGGGAACGA
LOC_Os09g15570
OsAffx.29856.1.S1_at--1059--2131Chr09:9510722..9510746 (25 bp)
ACAGATCGGGCTTCCGCTTCATCGA
LOC_Os09g15570
OsAffx.29856.1.S1_at--207--5731Chr09:9510699..9510723 (25 bp)
GACGGCGACAATCCCGACGACGTGC
LOC_Os09g15570
OsAffx.29856.1.S1_at--296--1771Chr09:9510650..9510674 (25 bp)
ACCTGAAGGTCTTCCTGCGGCGCGA
LOC_Os09g15570
OsAffx.29856.1.S1_at--103--8051Chr09:9510601..9510625 (25 bp)
GGAGAAGAACCTGTCCTTGCGCGAC
LOC_Os09g15570
OsAffx.29856.1.S1_at--862--4591Chr09:9510519..9510543 (25 bp)
GCGAAGATCGTCTCCGCAGGCGCAG
LOC_Os09g15570
OsAffx.29856.1.S1_at--237--3491Chr09:9510503..9510527 (25 bp)
CAGGCGCAGGGTACGTCGTGCTCAC
LOC_Os09g15570
OsAffx.29856.1.S1_at--1142--5971Chr09:9510468..9510492 (25 bp)
GAGACATGGCTGTTCTCCGTGGAGC
LOC_Os09g15570
OsAffx.29856.1.S1_at--894--9491Chr09:9510455..9510479 (25 bp)
TCTCCGTGGAGCTCGCGACTATGGA
LOC_Os09g15570
OsAffx.29856.1.S1_at--746--871Chr09:9510370..9510394 (25 bp)
ATGGCCGCCGACCTTGAGTGCTCAC
LOC_Os09g15570
OsAffx.29856.1.S1_at--385--1131Chr09:9510354..9510378 (25 bp)
AGTGCTCACGTATCCTACTGCAAGA
LOC_Os09g15570
Target Sequence 
CCTGCTGGATCTTCTTCGGGAACGACGCCGACGCCGACGCCGTGCTCGCCTTGGACATGCGCTACCCTTCCGCCTGCAAG
TTCATGCTCGCCCGCGTCCCGGGCAGCCTCCGCGGCGGCTCGTGCGGCGACAGATCGGGCTTCCGCTTCATCGACGGCGA
CAATCCCGACGACGTGCGCCTCGTCAGCGTGGTCGGCGGCGACCTGAAGGTCTTCCTGCGGCGCGACGGGAGCGGCGACG
CGTGGGAGCCGGAGAAGAACCTGTCCTTGCGCGACGCCACCAGCGGTATGCCGGGGCGCAAGGAGAGTTACTTCGGCGGC
GCGGGGGCGGCGGCGAAGATCGTCTCCGCAGGCGCAGGGTACGTCGTGCTCACCCCGGCGGAGGAGACATGGCTGTTCTC
CGTGGAGCTCGCGACTATGGAGGTGGAACGCAAGCACAGCAGGAACAGGTACGCCGGCGAGTTTTTCCCGTACCATCCGC
CATGGCCGCCGACCTTGAGTGCTCACGTATCCTACTGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis