Browse Element(s) Details


OsAffx.29897.1.S1_at

Description tigr:9637.m01502
TID=OsAffx.29897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1761010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein
LOC_Os09g17610Os.50548.2.S1_x_at11/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17610OsAffx.29897.1.S1_at10/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17620Os.50548.3.S1_at11/119+10769144..10771860expressed protein
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29897.1.S1_at--930--8771NONE
TGTTTTCCTCCAGGGAGCCATGGAA
NONE
OsAffx.29897.1.S1_at--498--8091Chr09:10768369..10768393 (25 bp)
GGAGCCATGGAACCATCATCTCTGT
LOC_Os09g17610
OsAffx.29897.1.S1_at--901--831Chr09:10768375..10768399 (25 bp)
ATGGAACCATCATCTCTGTCACTTC
LOC_Os09g17610
OsAffx.29897.1.S1_at--1066--411Chr09:10768383..10768407 (25 bp)
ATCATCTCTGTCACTTCGGCTCAAA
LOC_Os09g17610
OsAffx.29897.1.S1_at--106--471Chr09:10768386..10768410 (25 bp)
ATCTCTGTCACTTCGGCTCAAAGCA
LOC_Os09g17610
OsAffx.29897.1.S1_at--1015--7091Chr09:10768392..10768416 (25 bp)
GTCACTTCGGCTCAAAGCAGCCATA
LOC_Os09g17610
OsAffx.29897.1.S1_at--691--1511Chr09:10768407..10768431 (25 bp)
AGCAGCCATATATGATCTGTTCAAC
LOC_Os09g17610
OsAffx.29897.1.S1_at--1064--471Chr09:10768421..10768445 (25 bp)
ATCTGTTCAACAGTAACTCATTGCA
LOC_Os09g17610
OsAffx.29897.1.S1_at--30--2551Chr09:10768435..10768459 (25 bp)
AACTCATTGCAAACATATGTGCCAT
LOC_Os09g17610
OsAffx.29897.1.S1_at--189--271Chr09:10768449..10768473 (25 bp)
ATATGTGCCATTCAGAATCCGCCAT
LOC_Os09g17610
OsAffx.29897.1.S1_at--831--771Chr09:10768451..10768475 (25 bp)
ATGTGCCATTCAGAATCCGCCATAT
LOC_Os09g17610
Target Sequence 
TGTTTTCCTCCAGGGAGCCATGGAACCATCATCTCTGTCACTTCGGCTCAAAGCAGCCATATATGATCTGTTCAACAGTA
ACTCATTGCAAACATATGTGCCATTCAGAATCCGCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis