Browse Element(s) Details


OsAffx.29899.1.S1_at

Description tigr:9637.m01513
TID=OsAffx.29899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1772011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed
LOC_Os09g17690NANA9+10820770..10821132hypothetical protein
LOC_Os09g17700NANA9+10825013..10825249hypothetical protein
LOC_Os09g17710NANA9+10829078..10830601transposon protein, putative, unclassified
LOC_Os09g17720OsAffx.29899.1.S1_at11/119+10831825..10833087hypothetical protein
LOC_Os09g17730Os.10309.1.S1_at11/119+10833974..10843000proton pump interactor, putative, expressed
LOC_Os09g17740NANA9+10844778..10846155Chlorophyll a-b binding protein 1, chloroplast precursor, putative, expressed
LOC_Os09g17750Os.49340.1.S1_at10/119+10848768..10852195oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g17760Os.24591.1.S1_at11/119+10855526..10861748expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29899.1.S1_at--996--10391Chr09:10831857..10831881 (25 bp)
TTTTGATGACTCCTACTTCGCACGA
LOC_Os09g17720
OsAffx.29899.1.S1_at--761--10631Chr09:10831873..10831897 (25 bp)
TTCGCACGATCAGTGTTGTACTTCT
LOC_Os09g17720
OsAffx.29899.1.S1_at--929--7011Chr09:10831890..10831914 (25 bp)
GTACTTCTGTACTATTGGAGCATTG
LOC_Os09g17720
OsAffx.29899.1.S1_at--104--51Chr09:10831911..10831935 (25 bp)
ATTGTCCAACGTTCTCTGCTTAAAA
LOC_Os09g17720
OsAffx.29899.1.S1_at--935--10471Chr09:10831930..10831954 (25 bp)
TTAAAAGCATCTTCACTCTCACCTT
LOC_Os09g17720
OsAffx.29899.1.S1_at--430--10591Chr09:10831953..10831977 (25 bp)
TTCTGCCCTCACTGGAGCAATAGCT
LOC_Os09g17720
OsAffx.29899.1.S1_at--237--4951Chr09:10832542..10832566 (25 bp)
GCATTTTGATCATGATGGAACCCAG
LOC_Os09g17720
OsAffx.29899.1.S1_at--41--10351Chr09:10832824..10832965 (25 bp)
TTAATTAATCGAGAGGGTGAACCTG
LOC_Os09g17720
OsAffx.29899.1.S1_at--803--4691Chr09:10832980..10833004 (25 bp)
GCGGCCGAAGCACTCTTAATGGCTT
LOC_Os09g17720
OsAffx.29899.1.S1_at--657--2551Chr09:10833011..10833035 (25 bp)
AACTGTCGAATACACGTGTGCCTCT
LOC_Os09g17720
OsAffx.29899.1.S1_at--122--8711Chr09:10833027..10833051 (25 bp)
TGTGCCTCTTGCCATATGCGCTAAT
LOC_Os09g17720
Target Sequence 
TTTTGATGACTCCTACTTCGCACGATCAGTGTTGTACTTCTGTACTATTGGAGCATTGTCCAACGTTCTCTGCTTAAAAG
CATCTTCACTCTCACCTTCTGCCCTCACTGGAGCAATAGCTCAGTGGGGCAAGACTCGGAGAGCAATGATGAAGCATTGC
ATTTTGATCATGATGGAACCCAGGTTTTTAAGTTGCTTTAAAAATAATATTAATCCATCTTTAAAACAGTTTAATAAATA
CTTAATTAATCGAGAGGGTGAACCTGAGAAGATTGTCCCAGCGGCCGAAGCACTCTTAATGGCTTGTGTCAAACTGTCGA
ATACACGTGTGCCTCTTGCCATATGCGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis