Browse Element(s) Details


OsAffx.29909.1.S1_at

Description tigr:9637.m01551
TID=OsAffx.29909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1807011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18030OsAffx.29907.2.S1_at11/119+11048168..11055785Protein kinase domain containing protein
LOC_Os09g18040OsAffx.29907.3.S1_at11/119+11058196..11059806Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18050NANA9+11067446..11067781hypothetical protein
LOC_Os09g18060NANA9+11070161..11070490hypothetical protein
LOC_Os09g18070OsAffx.29909.1.S1_at11/119+11074866..11076417hypothetical protein
LOC_Os09g18080OsAffx.7455.1.S1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080Os.54787.1.S1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080Os.48426.1.A1_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18080OsAffx.17770.1.S1_x_at1/119+11077035..11084278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18090NANA9+11086287..11089484hypothetical protein
LOC_Os09g18100NANA9+11092660..11095911retrotransposon protein, putative, unclassified
LOC_Os09g18110NANA9+11096695..11099159retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29909.1.S1_at--374--5251Chr09:11074898..11074971 (25 bp)
GAATCGATTTATGGAGCGCTGTAAT
LOC_Os09g18070
OsAffx.29909.1.S1_at--519--10771Chr09:11074979..11075003 (25 bp)
TTGAGGCAGAGATCCTTGCCTGCGT
LOC_Os09g18070
OsAffx.29909.1.S1_at--647--10691Chr09:11074994..11075018 (25 bp)
TTGCCTGCGTGGAAGGAATTGCATT
LOC_Os09g18070
OsAffx.29909.1.S1_at--262--51Chr09:11075011..11075035 (25 bp)
ATTGCATTAGCGCTTCACTGGACTA
LOC_Os09g18070
OsAffx.29909.1.S1_at--555--9611Chr09:11075025..11075049 (25 bp)
TCACTGGACTATGCTCCCTTTTGAA
LOC_Os09g18070
OsAffx.29909.1.S1_at--415--4791Chr09:11075037..11075061 (25 bp)
GCTCCCTTTTGAAGTGGAAACAGAT
LOC_Os09g18070
OsAffx.29909.1.S1_at--705--5531Chr09:11075053..11075077 (25 bp)
GAAACAGATTGGTTAACGCTGACAC
LOC_Os09g18070
OsAffx.29909.1.S1_at--922--1831Chr09:11075068..11075092 (25 bp)
ACGCTGACACAGATGCTGCAATCAA
LOC_Os09g18070
OsAffx.29909.1.S1_at--610--1411Chr09:11075094..11075118 (25 bp)
AGAAAAAGACCTGTCGGCCTCTGCG
LOC_Os09g18070
OsAffx.29909.1.S1_at--840--3771Chr09:11075112..11075136 (25 bp)
CTCTGCGCACCTAGTCAGGGAGATA
LOC_Os09g18070
OsAffx.29909.1.S1_at--851--3871Chr09:11075168..11075192 (25 bp)
CTGTCAGGAAGATCCATCACGCTCA
LOC_Os09g18070
Target Sequence 
GAATCGATTTATGGAGCGCTGTAATGGGGCGCTTGAGGCAGAGATCCTTGCCTGCGTGGAAGGAATTGCATTAGCGCTTC
ACTGGACTATGCTCCCTTTTGAAGTGGAAACAGATTGGTTAACGCTGACACAGATGCTGCAATCAAGAGAAAAAGACCTG
TCGGCCTCTGCGCACCTAGTCAGGGAGATAAGGAGGCTCATTGACGGGGACAGGGAAATCTCTGTCAGGAAGATCCATCA
CGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis