Browse Element(s) Details


OsAffx.29943.1.S1_at

Description tigr:9633.m01388
TID=OsAffx.29943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1567011/11hypothetical protein
LOC_Os09g205706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15600OsAffx.14708.1.S1_at11/115+8818436..8819408hypothetical protein
LOC_Os05g15610NANA5+8823696..8823965hypothetical protein
LOC_Os05g15620NANA5+8824382..8824636hypothetical protein
LOC_Os05g15630Os.11249.1.S1_at11/115+8825892..8827971plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os05g15640NANA5+8830657..8831369retrotransposon, putative, centromere-specific
LOC_Os05g15650OsAffx.4349.1.S1_x_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15650OsAffx.4349.1.S1_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15660OsAffx.25367.1.S1_at1/115+8836688..8839197retrotransposon, putative, centromere-specific
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed
LOC_Os05g15700OsAffx.26910.1.S1_at11/115+8853370..8853961hypothetical protein
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29943.1.S1_at--20--2751Chr05:8844571..8844635 (25 bp)
AAGACTGTCGTCACCAAGGATGAAG
LOC_Os05g15670
OsAffx.29943.1.S1_at--944--1951Chr05:8844568..8844632 (25 bp)
ACTGTCGTCACCAAGGATGAAGGGA
LOC_Os05g15670
OsAffx.29943.1.S1_at--1010--4211Chr05:8844338..8844362 (25 bp)
CCGCGGAAGCTGAGGCGCCGCCATC
LOC_Os05g15670
OsAffx.29943.1.S1_at--1105--4151Chr05:8844323..8844347 (25 bp)
CGCCGCCATCGGCTACTGATGATTT
LOC_Os05g15670
OsAffx.29943.1.S1_at--209--8811Chr05:8844287..8844311 (25 bp)
TGTTGCGTATCAGTGTAGAAGAAAC
LOC_Os05g15670
OsAffx.29943.1.S1_at--1003--7692Chr09:12394059..12394083 (25 bp)
GGGTCCGACGGAAATGTACATGCTC
LOC_Os09g20570
OsAffx.29943.1.S1_at--473--1932Chr09:12394066..12394090 (25 bp)
ACGGAAATGTACATGCTCGGATGGA
LOC_Os09g20570
OsAffx.29943.1.S1_at--710--2272Chr09:12394070..12394094 (25 bp)
AAATGTACATGCTCGGATGGAAATC
LOC_Os09g20570
OsAffx.29943.1.S1_at--841--7012Chr09:12394074..12394098 (25 bp)
GTACATGCTCGGATGGAAATCTTAA
LOC_Os09g20570
OsAffx.29943.1.S1_at--228--3512Chr09:12394077..12394101 (25 bp)
CATGCTCGGATGGAAATCTTAACGG
LOC_Os09g20570
OsAffx.29943.1.S1_at--132--3772Chr09:12394081..12394105 (25 bp)
CTCGGATGGAAATCTTAACGGGAGT
LOC_Os09g20570
Target Sequence 
AAGACTGTCGTCACCAAGGATGAAGGGACCAATACAGTCGAGGCTATTGAGCGTCGCCGCCGCGTCCGAGCCGGCCGGGG
CCGCGGAAGCCGAGGAGACCGTCGTCGCTGCCGCGTCCGAGCAGGCCGCGGCCGCGGAAGCCGAGGCGACCGTCGTCACG
GCCGCGTCCGAGCCGGCCGTGGCCACGGAAGCCGAGGCGACCATCTTTGCCGCCGCATCCGAGCCAGCCGTGGCCGCGGA
AGCTGAGGCGCCGCCATCGGCTACTGATGATTTGGATTTGCTGATGTTGCGTATCAGTGTAGAAGAAACGGAGAAGAAAC
AAAGGGTCCGACGGAAATGTACATGCTCGGATGGAAATCTTAACGGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis