Browse Element(s) Details


Os.11249.1.S1_at

Description gb:AB091471.1
DB_XREF= gi:29420794
TID=Os.11249.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsBLE3 mRNA for hypothetical protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) OsBLE3 mRNA for hypothetical protein, complete cds.
FL= gb:AB091471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1563011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15580OsAffx.20689.1.A1_x_at1/115+8801355..8811155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15580OsAffx.22947.1.S1_x_at1/115+8801355..8811155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15580Os.23638.1.A1_x_at1/115+8801355..8811155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15590NANA5+8815670..8816503transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15600OsAffx.14708.1.S1_at11/115+8818436..8819408hypothetical protein
LOC_Os05g15610NANA5+8823696..8823965hypothetical protein
LOC_Os05g15620NANA5+8824382..8824636hypothetical protein
LOC_Os05g15630Os.11249.1.S1_at11/115+8825892..8827971plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os05g15640NANA5+8830657..8831369retrotransposon, putative, centromere-specific
LOC_Os05g15650OsAffx.4349.1.S1_x_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15650OsAffx.4349.1.S1_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15660OsAffx.25367.1.S1_at1/115+8836688..8839197retrotransposon, putative, centromere-specific
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11249.1.S1_at--842--4311Chr05:8827355..8827677 (25 bp)
CCATCTTTTATCTTCTTCGTGGTGG
LOC_Os05g15630
Os.11249.1.S1_at--310--6891Chr05:8827311..8827335 (25 bp)
GTATAGCCTGCTCGTACTGGCCGTG
LOC_Os05g15630
Os.11249.1.S1_at--790--1131Chr05:8827277..8827301 (25 bp)
AGTGCCCTCTCCAGATTGGCGCTAA
LOC_Os05g15630
Os.11249.1.S1_at--379--10871Chr05:8827264..8827286 (23 bp)
TTGGCGCTAACAACAGATGTGGTGT
LOC_Os05g15630
Os.11249.1.S1_at--564--8391Chr05:8826295..8826319 (25 bp)
GGCGCCATATCGGACATCGCGAAGA
LOC_Os05g15630
Os.11249.1.S1_at--918--8691Chr05:8826240..8826264 (25 bp)
TGTGCGGGCAGATACACGCCTACTG
LOC_Os05g15630
Os.11249.1.S1_at--892--2071Chr05:8826138..8826162 (25 bp)
ACATTGTCACCGATGTCATTTGCCC
LOC_Os05g15630
Os.11249.1.S1_at--100--211Chr05:8826121..8826145 (25 bp)
ATTTGCCCCTGCCATTAGCAGAGTC
LOC_Os05g15630
Os.11249.1.S1_at--329--11Chr05:8826047..8826071 (25 bp)
ATACTTCCATCACCAAAAATTCGGG
LOC_Os05g15630
Os.11249.1.S1_at--95--2031Chr05:8825954..8825978 (25 bp)
ACTACATTGTGATCTATGGTCCTCT
LOC_Os05g15630
Os.11249.1.S1_at--627--10111Chr05:8825940..8825964 (25 bp)
TATGGTCCTCTGTATCTTGTTGTTA
LOC_Os05g15630
Target Sequence 
CCATCTTTTATCTTCTTCGTGGTGGCGTATGCCGTGGCGGCCGCGTATAGCCTGCTCGTACTGGCCGTGCCGGCAGGGAG
TGCCCTCTCCAGATTGGCGCTAACAACAGATGTGGTGTTGGGGATGGTGCTCGCCGGTGCCGTGGCCTCCGCCGGCGCCA
TATCGGACATCGCGAAGAACGGCAACTCGCACGCCGGGTGNCTNCCGGTGTGCGGGCAGATACACGCCTACTGCAACCAC
GTCATGGCGGCGCTCATCGCCGGCTTCGTCGCGCTGGCCGTCCACTTCGTCGTCGTCATGTACTCCCTCCACATTGTCAC
CGATGTCATTTGCCCCTGCCATTAGCAGAGTCTATCTATATATATAGTCCATAGTAGCAGTATATATATAGGTCGTGATA
TATACTTCCATCACCAAAAATTCGGGTACGTATATACCATTTTATTTTCTCTATATCTATGTCTCAATTTGTTAAAGTTA
TGTTTCAGATGGCAACTACATTGTGATCTATGGTCCTCTGTATCTTGTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis