Browse Element(s) Details


OsAffx.4349.1.S1_x_at

Description tigr:9633.m01386
TID=OsAffx.4349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1565010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15580OsAffx.20689.1.A1_x_at1/115+8801355..8811155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15580OsAffx.22947.1.S1_x_at1/115+8801355..8811155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15580Os.23638.1.A1_x_at1/115+8801355..8811155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15590NANA5+8815670..8816503transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15600OsAffx.14708.1.S1_at11/115+8818436..8819408hypothetical protein
LOC_Os05g15610NANA5+8823696..8823965hypothetical protein
LOC_Os05g15620NANA5+8824382..8824636hypothetical protein
LOC_Os05g15630Os.11249.1.S1_at11/115+8825892..8827971plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os05g15640NANA5+8830657..8831369retrotransposon, putative, centromere-specific
LOC_Os05g15650OsAffx.4349.1.S1_x_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15650OsAffx.4349.1.S1_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15660OsAffx.25367.1.S1_at1/115+8836688..8839197retrotransposon, putative, centromere-specific
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed
LOC_Os05g15700OsAffx.26910.1.S1_at11/115+8853370..8853961hypothetical protein
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4349.1.S1_x_at--163--7671Chr05:8831961..8831984 (24 bp)
GGGTTGTTACACTACCTAGGAGTCT
LOC_Os05g15650
OsAffx.4349.1.S1_x_at--799--6631Chr05:8831959..8831983 (25 bp)
GTTGTTACACTACCTAGGAGTCTGG
LOC_Os05g15650
OsAffx.4349.1.S1_x_at--358--6771Chr05:8831956..8831980 (25 bp)
GTTACACTACCTAGGAGTCTGGTTA
LOC_Os05g15650
OsAffx.4349.1.S1_x_at--383--3311NONE
CACTACCTAGGAGTCTGGTTATGAT
NONE
OsAffx.4349.1.S1_x_at--909--4291Chr05:8831892..8831971 (25 bp)
CCTAGGAGTCTGGTTATGATTAAAC
LOC_Os05g15650
OsAffx.4349.1.S1_x_at--709--1151Chr05:8831886..8831965 (25 bp)
AGTCTGGTTATGATTAAACTCTCAT
LOC_Os05g15650
OsAffx.4349.1.S1_x_at--478--65310Chr05:4719995..4720019 (25 bp)
GATTAAACTCTCATACTTCCAAAAA
NONE
OsAffx.4349.1.S1_x_at--210--2558Chr04:26056229..26056253 (25 bp)
AACTCTCATACTTCCAAAAACAGAT
NONE
OsAffx.4349.1.S1_x_at--238--24911Chr08:19812998..19813022 (25 bp)
AACAGATTTGGAAATTCTTCTTCCT
NONE
OsAffx.4349.1.S1_x_at--1026--94911Chr08:19813025..19813049 (25 bp)
TCTCTACACCGGCAACAAGCACAGG
NONE
OsAffx.4349.1.S1_x_at--168--51510Chr08:19813036..19813060 (25 bp)
GCAACAAGCACAGGCCGATCTATTC
NONE
Target Sequence 
GGGTTGTTACACTACCTAGGAGTCTGGTTATGATTAAACTCTCATACTTCCAAAAACAGATTTGGAAATTCTTCTTCCTC
CTCTCTACACCGGCAACAAGCACAGGCCGATCTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4349.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis