Browse Element(s) Details


OsAffx.4350.1.S1_at

Description tigr:9633.m01394
TID=OsAffx.4350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine-specific receptor protein kinase (EC 2.7.1.-) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1572011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15660OsAffx.25367.1.S1_at1/115+8836688..8839197retrotransposon, putative, centromere-specific
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed
LOC_Os05g15700OsAffx.26910.1.S1_at11/115+8853370..8853961hypothetical protein
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15750OsAffx.18924.2.S1_x_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15750OsAffx.19421.2.S1_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15760NANA5+8876452..8877561transposon protein, putative, unclassified
LOC_Os05g15770Os.37717.1.A2_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15770Os.37717.1.A1_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15780OsAffx.26913.1.S1_at11/115+8885375..8886080hypothetical protein
LOC_Os05g15790OsAffx.14713.1.S1_at10/115+8890086..8890606hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4350.1.S1_at--250--1911Chr05:8864408..8864432 (25 bp)
ACAGGCCGTCGTGGAAACATCAACA
LOC_Os05g15720
OsAffx.4350.1.S1_at--156--7591Chr05:8865301..8865325 (25 bp)
GGGCTTCACAATTCTGGATAGGGCT
LOC_Os05g15720
OsAffx.4350.1.S1_at--955--7851Chr05:8865316..8865340 (25 bp)
GGATAGGGCTCCACGCAGTCAAACG
LOC_Os05g15720
OsAffx.4350.1.S1_at--588--5411Chr05:8865363..8865387 (25 bp)
GAAGCGAGTTCTCCATACATGGCCA
LOC_Os05g15720
OsAffx.4350.1.S1_at--900--8631Chr05:8865441..8865465 (25 bp)
TGGGACATTCAGCTTCACAGGACAC
LOC_Os05g15720
OsAffx.4350.1.S1_at--820--2271Chr05:8865581..8865605 (25 bp)
AAAGTTCATTTACACGACCGCACCA
LOC_Os05g15720
OsAffx.4350.1.S1_at--71--5831Chr05:8865596..8865620 (25 bp)
GACCGCACCATATGCTAGCAGCAGG
LOC_Os05g15720
OsAffx.4350.1.S1_at--316--5211Chr05:8865685..8865709 (25 bp)
GAATTCAAGCGGCAGCCTAGCTTAA
LOC_Os05g15720
OsAffx.4350.1.S1_at--359--5431Chr05:8865729..8865753 (25 bp)
GAACCACACTCTAAGCTATGTCGGG
LOC_Os05g15720
OsAffx.4350.1.S1_at--781--8871Chr05:8865759..8865783 (25 bp)
TGAGACAGTTAACCACACCTACAGT
LOC_Os05g15720
OsAffx.4350.1.S1_at--1053--251Chr05:8865792..8865816 (25 bp)
ATATGCGCTCCTTCACAGTTTATGT
LOC_Os05g15720
Target Sequence 
ACAGGCCGTCGTGGAAACATCAACAAGGGGCTTCACAATTCTGGATAGGGCTCCACGCAGTCAAACGTTGGATGAACTCA
TGAACACCGGAAGCGAGTTCTCCATACATGGCCAGTATGTCTGGTTACCTTGAAGCAGCTGTTAAATAGATATGTGCAAA
TGGAGAATGGGACATTCAGCTTCACAGGACACTTGGTGAATCTGAGTTGAGGAGCTGGAATGAACTGCAAAATATTCTGG
ATATGAAACAAGAGATCATTGTTATTTTTTCGAACACGCTTTAAGCGTCGATGTATTAGAAGCTATCAAAGTTCATTTAC
ACGACCGCACCATATGCTAGCAGCAGGCACCGCCACCAGAACGTTGTACAAAATGCAAAAGTTTAGCGGTGCAAGCTAAA
GTTTCAGGGAAGAATTCAAGCGGCAGCCTAGCTTAAGAAAATGAAATGGCTAAGAGAACCACACTCTAAGCTATGTCGGG
GAAAGTGAGACAGTTAACCACACCTACAGTGTGTGGCTATATGCGCTCCTTCACAGTTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis