Browse Element(s) Details


OsAffx.26913.1.S1_at

Description tigr:9633.m01400
TID=OsAffx.26913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1578011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15750OsAffx.18924.2.S1_x_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15750OsAffx.19421.2.S1_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15760NANA5+8876452..8877561transposon protein, putative, unclassified
LOC_Os05g15770Os.37717.1.A2_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15770Os.37717.1.A1_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15780OsAffx.26913.1.S1_at11/115+8885375..8886080hypothetical protein
LOC_Os05g15790OsAffx.14713.1.S1_at10/115+8890086..8890606hypothetical protein
LOC_Os05g15800OsAffx.14714.1.S1_at11/115+8898037..8899438hypothetical protein
LOC_Os05g15810NANA5+8901266..8905597retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26913.1.S1_at--1080--8251Chr05:8886026..8886050 (25 bp)
GGCAGCGTGACTCAGAGCGCACCTA
LOC_Os05g15780
OsAffx.26913.1.S1_at--559--8951Chr05:8886019..8886043 (25 bp)
TGACTCAGAGCGCACCTAAGGCGCT
LOC_Os05g15780
OsAffx.26913.1.S1_at--788--9771Chr05:8886003..8886027 (25 bp)
TAAGGCGCTTGTCCAGGAGCATCTT
LOC_Os05g15780
OsAffx.26913.1.S1_at--344--8711Chr05:8885994..8886018 (25 bp)
TGTCCAGGAGCATCTTGGGCTAGCT
LOC_Os05g15780
OsAffx.26913.1.S1_at--1055--1531Chr05:8885966..8886010 (25 bp)
AGCATCTTGGGCTAGCTGCGGCGAC
LOC_Os05g15780
OsAffx.26913.1.S1_at--209--5171Chr05:8885917..8885941 (25 bp)
GCAAGGTATAGAGGCTTTTATAGCC
LOC_Os05g15780
OsAffx.26913.1.S1_at--89--1331Chr05:8885908..8885932 (25 bp)
AGAGGCTTTTATAGCCAGGGCTAGT
LOC_Os05g15780
OsAffx.26913.1.S1_at--417--8071Chr05:8885828..8885852 (25 bp)
GGAGCATGGACAACGACAGTACGAG
LOC_Os05g15780
OsAffx.26913.1.S1_at--403--8151Chr05:8885821..8885845 (25 bp)
GGACAACGACAGTACGAGCTCACCC
LOC_Os05g15780
OsAffx.26913.1.S1_at--14--1191Chr05:8885811..8885835 (25 bp)
AGTACGAGCTCACCCCTTCATCTTG
LOC_Os05g15780
OsAffx.26913.1.S1_at--980--9591Chr05:8885794..8885818 (25 bp)
TCATCTTGAACGCACGGCCGCGGTA
LOC_Os05g15780
Target Sequence 
GGCAGCGTGACTCAGAGCGCACCTAAGGCGCTTGTCCAGGAGCATCTTGGGCTAGCTGCGGCGACGGGAAGGGCGAAAGG
AGGAAGACGGCAAGGTATAGAGGCTTTTATAGCCAGGGCTAGTGGATGCAGGAGCTGCGATGGCTTCGGGGTAAAGGAAG
GAGGCATGATGGCACAAGGGAGCATGGACAACGACAGTACGAGCTCACCCCTTCATCTTGAACGCACGGCCGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis