Browse Element(s) Details


Os.37717.1.A2_s_at

Description gb:AK065866.1
DB_XREF= gi:32975884
TID=Os.37717.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.37717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045O11, full insert sequence.
FL= gb:AK065866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1577011/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15750OsAffx.18924.2.S1_x_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15750OsAffx.19421.2.S1_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15760NANA5+8876452..8877561transposon protein, putative, unclassified
LOC_Os05g15770Os.37717.1.A2_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15770Os.37717.1.A1_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15780OsAffx.26913.1.S1_at11/115+8885375..8886080hypothetical protein
LOC_Os05g15790OsAffx.14713.1.S1_at10/115+8890086..8890606hypothetical protein
LOC_Os05g15800OsAffx.14714.1.S1_at11/115+8898037..8899438hypothetical protein
LOC_Os05g15810NANA5+8901266..8905597retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37717.1.A2_s_at--595--1931Chr05:8882145..8882169 (25 bp)
ACGGCTGGTAATGAGCCTGGTCTCC
LOC_Os05g15770
Os.37717.1.A2_s_at--1120--9751Chr05:8882137..8882161 (25 bp)
TAATGAGCCTGGTCTCCTGGATCAG
LOC_Os05g15770
Os.37717.1.A2_s_at--461--7811Chr05:8882127..8882151 (25 bp)
GGTCTCCTGGATCAGGTTCTGTGAT
LOC_Os05g15770
Os.37717.1.A2_s_at--848--6711Chr05:8882112..8882136 (25 bp)
GTTCTGTGATGGACGGCTGGTAATT
LOC_Os05g15770
Os.37717.1.A2_s_at--336--7071Chr05:8882093..8882117 (25 bp)
GTAATTAACCAGACCTTGATCCATT
LOC_Os05g15770
Os.37717.1.A2_s_at--495--6371Chr05:8882076..8882100 (25 bp)
GATCCATTTTCACTTTGATCACTGA
LOC_Os05g15770
Os.37717.1.A2_s_at--1004--10251Chr05:8882063..8882087 (25 bp)
TTTGATCACTGATCACTTCACTGGA
LOC_Os05g15770
Os.37717.1.A2_s_at--390--9691Chr05:8882051..8882075 (25 bp)
TCACTTCACTGGATTCATGCACGAG
LOC_Os05g15770
Os.37717.1.A2_s_at--113--771Chr05:8881993..8882017 (25 bp)
ATGTCATGTGACGTGCATGCACAAA
LOC_Os05g15770
Os.37717.1.A2_s_at--1013--3471Chr05:8881868..8881892 (25 bp)
CAGGCTTACTTTCTTCTGGGTGATA
LOC_Os05g15770
Os.37717.1.A2_s_at--1041--3671Chr05:8881860..8881884 (25 bp)
CTTTCTTCTGGGTGATATGTTGTAT
LOC_Os05g15770
Target Sequence 
ACGGCTGGTAATGAGCCTGGTCTCCTGGATCAGGTTCTGTGATGGACGGCTGGTAATTAACCAGACCTTGATCCATTTTC
ACTTTGATCACTGATCACTTCACTGGATTCATGCACGAGCTACTANTAGTACGTGCACAAATAAAGTAAGTAATGTCATG
TGACGTGCATGCACAAATAAAGATGGAAATGATATGATAAAAGATTGGGGTATGTGTGNTGTGTGTGTGTTGGATAATGT
AATGTAATGCACAAATAAAGTGAGGTGATCAGGACGGGCAGGCTTACTTTCTTCTGGGTGATATGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37717.1.A2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis