Browse Element(s) Details


OsAffx.29946.1.S1_at

Description tigr:9637.m01772
TID=OsAffx.29946.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2071010/11RNA recognition motif family protein
LOC_Os09g207805/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed
LOC_Os09g20700NANA9+12465522..12466997Strictosidine synthase family protein
LOC_Os09g20710OsAffx.29946.1.S1_at10/119+12474469..12476640RNA recognition motif family protein
LOC_Os09g20720NANA9+12483351..12483830Strictosidine synthase 1 precursor, putative
LOC_Os09g20730OsAffx.27726.2.S1_at11/119+12484713..12486169hypothetical protein
LOC_Os09g20730Os.55138.1.S1_x_at1/119+12484713..12486169hypothetical protein
LOC_Os09g20740OsAffx.6347.1.S1_at11/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20740Os.54747.1.S1_at1/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29946.1.S1_at--1026--9471Chr09:12475597..12475621 (25 bp)
TCTGAAGCAGCAAGGGAGCAGCCCA
LOC_Os09g20710
OsAffx.29946.1.S1_at--321--5391NONE
GAAGCAGCACGTGTGATAGCTAAAG
NONE
OsAffx.29946.1.S1_at--1013--1011Chr09:12476140..12476164 (25 bp)
AGGTACGTATGTGGCATGGCCTCCA
LOC_Os09g20710
OsAffx.29946.1.S1_at--904--6611Chr09:12476166..12476190 (25 bp)
GTTGCCATTCGAGAGGGAACCACCA
LOC_Os09g20710
OsAffx.29946.1.S1_at--253--5431Chr09:12476182..12476206 (25 bp)
GAACCACCAGCTGCGGATGGCAACA
LOC_Os09g20710
OsAffx.29946.1.S1_at--175--2811Chr09:12476297..12476321 (25 bp)
AAGATGCCTCTGAAGGCACCACCTG
LOC_Os09g20710
OsAffx.29946.1.S1_at--624--9192Chr09:12520059..12520083 (25 bp)
TCTGCAAGCCGTTTGGGCCACTTAG
LOC_Os09g20780
OsAffx.29946.1.S1_at--512--10832Chr09:12520071..12520095 (25 bp)
TTGGGCCACTTAGGATGTACCATTT
LOC_Os09g20780
OsAffx.29946.1.S1_at--691--8752Chr09:12520086..12520110 (25 bp)
TGTACCATTTGGTGATGCGTAATAG
LOC_Os09g20780
OsAffx.29946.1.S1_at--555--1152Chr09:12520148..12520172 (25 bp)
AGTCGACAGCATGCGGAGAGTGCCA
LOC_Os09g20780
OsAffx.29946.1.S1_at--895--5012Chr09:12520188..12520212 (25 bp)
GCAGGATCATCCATGGACGCAAGCT
LOC_Os09g20780
Target Sequence 
TCTGAAGCAGCAAGGGAGCAGCCCAAAAACTCTGAAGCAGCACGTGTGATAGCTAAAGTGGTGGCGAGGTACGTATGTGG
CATGGCCTCCATGTTGCCATTCGAGAGGGAACCACCAGCTGCGGATGGCAACAAGAAGCTGTGCTACATCTGTGGAGACG
ACGACGGCAGCCATGAAGAATTAAGCTGCCCCTTCAACTACATGTACTACCACATGTCTGATGAAGATGCCTCTGAAGGC
ACCACCTGCGAGGGGAGTTGCTCCGCGGGGAAGCACCCCATGGCCGNNNNNCGTCNTCNNNGGCTCCGGCNGCCNTCGCG
AGTTCTTGCNGTGCGTCGTCCGGGTGAACAACTTCCCGACCAAGCTCCGGCCATGGGACCTCTCCTGGCTCTGCAAGCCG
TTTGGGCCACTTAGGATGTACCATTTGGTGATGCGTAATAGNAAGTTCTCCAGGGGCTTTGGCTACGCCATCTTCTNGAG
TCGACAGCATGCGGAGAGTGCCATNGANNNGCTCAATGGCAGGATCATCCATGGACGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis