Browse Element(s) Details


OsAffx.29954.1.S1_at

Description tigr:9637.m01808
TID=OsAffx.29954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21010OsAffx.17812.1.S1_at5/119+12670658..12671023hypothetical protein
LOC_Os09g21020Os.31662.1.S2_at9/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21020OsAffx.21754.1.S1_x_at1/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21030NANA9+12683680..12684069hypothetical protein
LOC_Os09g21040OsAffx.24701.1.S1_at5/119+12684745..12685682expressed protein
LOC_Os09g21040OsAffx.13010.1.S1_x_at4/119+12684745..12685682expressed protein
LOC_Os09g21050OsAffx.17814.1.S1_at11/119+12692578..12693000hypothetical protein
LOC_Os09g21060OsAffx.29954.1.S1_at11/119+12695927..12696302expressed protein
LOC_Os09g21060OsAffx.29954.1.S1_s_at11/119+12695927..12696302expressed protein
LOC_Os09g21070OsAffx.17815.1.S1_at11/119+12701497..12701886hypothetical protein
LOC_Os09g21080OsAffx.17816.1.S1_x_at11/119+12706784..12707074hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_x_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21100OsAffx.17818.1.S1_at11/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21100Os.15690.1.S1_at1/119+12720513..12725246Mov34/MPN/PAD-1 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29954.1.S1_at--1115--5711Chr09:12696176..12696200 (25 bp)
GACTGCTGGGTCTGGGACTGCCCCT
LOC_Os09g21060
OsAffx.29954.1.S1_at--149--8631Chr09:12696170..12696194 (25 bp)
TGGGTCTGGGACTGCCCCTCCGCTG
LOC_Os09g21060
OsAffx.29954.1.S1_at--1016--9111Chr09:12696134..12696158 (25 bp)
TGCTGCACAATGTCGGGTTGCACAT
LOC_Os09g21060
OsAffx.29954.1.S1_at--476--5131Chr09:12696130..12696154 (25 bp)
GCACAATGTCGGGTTGCACATCTAC
LOC_Os09g21060
OsAffx.29954.1.S1_at--838--3191Chr09:12696127..12696151 (25 bp)
CAATGTCGGGTTGCACATCTACGTG
LOC_Os09g21060
OsAffx.29954.1.S1_at--478--771Chr09:12696125..12696149 (25 bp)
ATGTCGGGTTGCACATCTACGTGCG
LOC_Os09g21060
OsAffx.29954.1.S1_at--988--7191Chr09:12696123..12696147 (25 bp)
GTCGGGTTGCACATCTACGTGCGTT
LOC_Os09g21060
OsAffx.29954.1.S1_at--555--7671Chr09:12696120..12696144 (25 bp)
GGGTTGCACATCTACGTGCGTTGAT
LOC_Os09g21060
OsAffx.29954.1.S1_at--27--10751Chr09:12696117..12696141 (25 bp)
TTGCACATCTACGTGCGTTGATGGC
LOC_Os09g21060
OsAffx.29954.1.S1_at--582--5111Chr09:12696115..12696139 (25 bp)
GCACATCTACGTGCGTTGATGGCGT
LOC_Os09g21060
OsAffx.29954.1.S1_at--615--2091Chr09:12696113..12696137 (25 bp)
ACATCTACGTGCGTTGATGGCGTAA
LOC_Os09g21060
Target Sequence 
GACTGCTGGGTCTGGGACTGCCCCTCCGCTGAAGCCGACGGCTGCTGCACAATGTCGGGTTGCACATCTACGTGCGTTGA
TGGCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis