Browse Element(s) Details


OsAffx.30053.1.S1_at

Description tigr:9637.m02391
TID=OsAffx.30053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2728011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27270NANA9+16579415..16579891RRNA methyltransferase 3, putative
LOC_Os09g27280OsAffx.30053.1.S1_at11/119+16587442..16587808hypothetical protein
LOC_Os09g27290OsAffx.24927.1.S1_x_at11/119+16590747..16592595hypothetical protein
LOC_Os09g27290OsAffx.24927.2.S1_x_at4/119+16590747..16592595hypothetical protein
LOC_Os09g27300OsAffx.30352.2.S1_at8/119+16594235..16601906retrotransposon protein, putative, unclassified
LOC_Os09g27310OsAffx.30352.4.S1_at9/119+16602552..16605767hypothetical protein
LOC_Os09g27310Os.39421.1.S1_at5/119+16602552..16605767hypothetical protein
LOC_Os09g27310OsAffx.20967.1.S1_x_at1/119+16602552..16605767hypothetical protein
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30053.1.S1_at--336--7611Chr09:16587744..16587768 (25 bp)
GGGCAAAGTATCGACCTGGGATCCG
LOC_Os09g27280
OsAffx.30053.1.S1_at--1061--2811Chr09:16587739..16587763 (25 bp)
AAGTATCGACCTGGGATCCGCCCAA
LOC_Os09g27280
OsAffx.30053.1.S1_at--408--9631Chr09:16587696..16587720 (25 bp)
TCAGCGGGTCCAAGTCGATCGGGTC
LOC_Os09g27280
OsAffx.30053.1.S1_at--659--9191Chr09:16587688..16587712 (25 bp)
TCCAAGTCGATCGGGTCGGCGTCGA
LOC_Os09g27280
OsAffx.30053.1.S1_at--982--7731Chr09:16587647..16587671 (25 bp)
GGTGTCTTCGCCATCGCAGTGGATA
LOC_Os09g27280
OsAffx.30053.1.S1_at--853--9571Chr09:16587643..16587667 (25 bp)
TCTTCGCCATCGCAGTGGATACCGG
LOC_Os09g27280
OsAffx.30053.1.S1_at--672--531Chr09:16587635..16587659 (25 bp)
ATCGCAGTGGATACCGGCGATCCTG
LOC_Os09g27280
OsAffx.30053.1.S1_at--426--7511Chr09:16587629..16587653 (25 bp)
GTGGATACCGGCGATCCTGGCCGAA
LOC_Os09g27280
OsAffx.30053.1.S1_at--705--311Chr09:16587625..16587649 (25 bp)
ATACCGGCGATCCTGGCCGAAGTTG
LOC_Os09g27280
OsAffx.30053.1.S1_at--600--6371Chr09:16587617..16587641 (25 bp)
GATCCTGGCCGAAGTTGACGGCACT
LOC_Os09g27280
OsAffx.30053.1.S1_at--805--2811Chr09:16587606..16587630 (25 bp)
AAGTTGACGGCACTGCACGGCACCA
LOC_Os09g27280
Target Sequence 
GGGCAAAGTATCGACCTGGGATCCGCCCAAAGTGGGTGCACGCCGCCGTCAGCGGGTCCAAGTCGATCGGGTCGGCGTCG
AGGAGGCCAACTCGTGGGGTGTCTTCGCCATCGCAGTGGATACCGGCGATCCTGGCCGAAGTTGACGGCACTGCACGGCA
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis