Browse Element(s) Details


OsAffx.30064.1.S1_at

Description tigr:9637.m02502
TID=OsAffx.30064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2832011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28290OsAffx.6428.1.S1_at11/119+17174189..17174891hypothetical protein
LOC_Os09g28300Os.21902.1.S1_at11/119+17181866..17187377Remorin, C-terminal region family protein, expressed
LOC_Os09g28310Os.15711.1.S1_at11/119+17188975..17193011bZIP transcription factor family protein, expressed
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein
LOC_Os09g28330Os.35344.18.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330Os.35344.3.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_x_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28340Os.6007.1.S1_at11/119+17206463..17208026expressed protein
LOC_Os09g28354Os.27176.1.S1_at11/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28354Os.26442.1.S1_at1/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30064.1.S1_at--549--1391Chr09:17195298..17195322 (25 bp)
AGACGTCACGTCGTGACATCTGCTT
LOC_Os09g28320
OsAffx.30064.1.S1_at--196--9351Chr09:17195355..17195379 (25 bp)
TCGCGTCGCGTGATGACACCTGAAT
LOC_Os09g28320
OsAffx.30064.1.S1_at--928--6311Chr09:17195366..17195390 (25 bp)
GATGACACCTGAATTGATCCTCCCT
LOC_Os09g28320
OsAffx.30064.1.S1_at--94--7631Chr09:17195427..17195451 (25 bp)
GGGACAAGCTACTCCGGCAGGCATG
LOC_Os09g28320
OsAffx.30064.1.S1_at--718--1991Chr09:17195437..17195461 (25 bp)
ACTCCGGCAGGCATGGTGACGTGAC
LOC_Os09g28320
OsAffx.30064.1.S1_at--304--811Chr09:17195449..17195473 (25 bp)
ATGGTGACGTGACCCGCTGCAACTA
LOC_Os09g28320
OsAffx.30064.1.S1_at--297--4751Chr09:17195464..17195488 (25 bp)
GCTGCAACTACGTACGCGCACTGCA
LOC_Os09g28320
OsAffx.30064.1.S1_at--970--3751Chr09:17195504..17195528 (25 bp)
CTCTCATCGCATTGGGCCAGGCCAG
LOC_Os09g28320
OsAffx.30064.1.S1_at--234--8331Chr09:17195559..17195583 (25 bp)
GGCTCCGCATCATTGCTGCTGTCAT
LOC_Os09g28320
OsAffx.30064.1.S1_at--675--8731Chr09:17195578..17195602 (25 bp)
TGTCATCGGCCATTTGCTGCGACAG
LOC_Os09g28320
OsAffx.30064.1.S1_at--476--1271Chr09:17196204..17196228 (25 bp)
AGATACTGACAGAGCGTCCCTGCGT
LOC_Os09g28320
Target Sequence 
AGACGTCACGTCGTGACATCTGCTTTCCCCTTATCCTCTCCGACCATAGCTACCACCTCGCGTCGCGTGATGACACCTGA
ATTGATCCTCCCTCGTGATCTCCACTTCCCGCTCACTCACCACCACCGCGGGACAAGCTACTCCGGCAGGCATGGTGACG
TGACCCGCTGCAACTACGTACGCGCACTGCACCCCACCCACCCCTCCTCTCATCGCATTGGGCCAGGCCAGCCGGCGCAG
GGTAGCACCGACGTGCTCGCCGGCTCCGCATCATTGCTGCTGTCATCGGCCATTTGCTGCGACAGCTTGCCCCGCCAGAG
CATGCATTGTCACCCAGATACTGACAGAGCGTCCCTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis