Browse Element(s) Details


OsAffx.30071.1.S1_at

Description tigr:9637.m02565
TID=OsAffx.30071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to mitochondrial uncoupling protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g290506/11Mitochondrial carrier protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28960NANA9+17615112..17617684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28970OsAffx.20387.1.S1_x_at2/119+17617937..17620748transposon protein, putative, unclassified
LOC_Os09g28980Os.25754.2.S1_x_at3/119+17621478..17622124hypothetical protein
LOC_Os09g28980Os.53479.1.S1_x_at1/119+17621478..17622124hypothetical protein
LOC_Os09g28990NANA9+17622708..17623887hypothetical protein
LOC_Os09g29000OsAffx.22699.1.S1_x_at2/119+17624640..17629210retrotransposon protein, putative, unclassified
LOC_Os09g29010NANA9+17631049..17632587hypothetical protein
LOC_Os09g29020NANA9+17632816..17633758transposon protein, putative, unclassified
LOC_Os09g29030OsAffx.17958.1.S1_at11/119+17634624..17635178hypothetical protein
LOC_Os09g29040NANA9+17640165..17640861hypothetical protein
LOC_Os09g29050OsAffx.30071.1.S1_at6/119+17641594..17642559Mitochondrial carrier protein
LOC_Os09g29060Os.49593.1.S1_x_at11/119+17644486..17647500expressed protein
LOC_Os09g29070Os.26384.1.S1_at10/119+17647474..17652620Glucose-6-phosphate isomerase, putative, expressed
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30071.1.S1_at--1085--151NONE
ATTTTTCGCATAGACCAGCAAAGGG
NONE
OsAffx.30071.1.S1_at--34--10031NONE
TAGACCAGCAAAGGGCGTACAAGCC
NONE
OsAffx.30071.1.S1_at--1023--3271NONE
CAAAGGGCGTACAAGCCTGCGGCCG
NONE
OsAffx.30071.1.S1_at--845--251NONE
ATATCGTGCGGGATTCCAGCTGCCC
NONE
OsAffx.30071.1.S1_at--343--5011NONE
GCAGGCCAGGCCAAGAGCCATCCTG
NONE
OsAffx.30071.1.S1_at--167--5771Chr09:17641791..17641815 (25 bp)
GACGTCGTCAAGACCAGGGTCATGA
LOC_Os09g29050
OsAffx.30071.1.S1_at--792--3231Chr09:17641783..17641807 (25 bp)
CAAGACCAGGGTCATGAACATGAAG
LOC_Os09g29050
OsAffx.30071.1.S1_at--264--7791Chr09:17641728..17641752 (25 bp)
GGTGCGCTCGACTGCCTGATCAAGA
LOC_Os09g29050
OsAffx.30071.1.S1_at--171--5731Chr09:17641719..17641743 (25 bp)
GACTGCCTGATCAAGACCGTGCGTT
LOC_Os09g29050
OsAffx.30071.1.S1_at--1084--3851Chr09:17641713..17641737 (25 bp)
CTGATCAAGACCGTGCGTTCGGAGG
LOC_Os09g29050
OsAffx.30071.1.S1_at--723--9251Chr09:17641625..17641649 (25 bp)
TCCTCTTCGTGACCCTCGAGCAGGT
LOC_Os09g29050
Target Sequence 
ATTTTTCGCATAGACCAGCAAAGGGCGTACAAGCCTGCGGCCGGGTCCCCGCCCCCCGTTAGCCCCCCATATCGTGCGGG
ATTCCAGCTGCCCCCGCAGGCCAGGCCAAGAGCCATCCTGGCGCCGCCCGGGCCAGGGCGCCGACGGGCTTGCCACGCAC
GTCGCGGCCGGGCCTTGCCCGCCGGCCTCGTGGCCGCGTCGGCGTCCACCCCCGTCGACGTCGTCAAGACCAGGGTCATG
AACATGAAGGTGGTGGCCGGCGCGCCGCCGCCCTACTCCGGTGCGCTCGACTGCCTGATCAAGACCGTGCGTTCGGAGGG
GGCGATGGCGCTGTACAAGGGGTTCGTCCCGACGGTGACGAGGCAGGGGCCCTTCACCATCGTCCTCTTCGTGACCCTCG
AGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis